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# This Python 3 environment comes with many helpful analytics libraries installed
# It is defined by the kaggle/python Docker image: https://github.com/kaggle/docker-python
# For example, here's several helpful packages to load
import numpy as np # linear algebra
import pandas as pd # data processing, CSV file I/O (e.g. pd.read_csv)
# Input data files are available in the read-only "../input/" directory
# For example, running this (by clicking run or pressing Shift+Enter) will list all files under the input directory
import os
for dirname, _, filenames in os.walk('/kaggle/input'):
for filename in filenames:
print(os.path.join(dirname, filename))
# You can write up to 20GB to the current directory (/kaggle/working/) that gets preserved as output when you create a version using "Save & Run All"
# You can also write temporary files to /kaggle/temp/, but they won't be saved outside of the current session
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In [2]:
import os
import matplotlib.pyplot as plt
import seaborn as sns
import pandas as pd
import numpy as np
from sklearn import neighbors, preprocessing, model_selection, cluster
File Paths¶
In [3]:
trainCsv = '../input/predict-volcanic-eruptions-ingv-oe/train.csv'
sampleSub = '../input/predict-volcanic-eruptions-ingv-oe/sample_submission.csv'
trainLogPath = '../input/predict-volcanic-eruptions-ingv-oe/train/'
In [4]:
train = pd.read_csv(trainCsv)
sampleSubmission = pd.read_csv(sampleSub)
logsTrainList = os.listdir(trainLogPath)
Understand Data¶
In [5]:
train.head(2)
Out[5]:
| segment_id | time_to_eruption | |
|---|---|---|
| 0 | 1136037770 | 12262005 |
| 1 | 1969647810 | 32739612 |
In [6]:
train.describe()
Out[6]:
| segment_id | time_to_eruption | |
|---|---|---|
| count | 4.431000e+03 | 4.431000e+03 |
| mean | 1.074694e+09 | 2.284891e+07 |
| std | 6.161966e+08 | 1.348439e+07 |
| min | 5.131810e+05 | 6.250000e+03 |
| 25% | 5.527934e+08 | 1.127016e+07 |
| 50% | 1.066153e+09 | 2.246559e+07 |
| 75% | 1.606350e+09 | 3.434356e+07 |
| max | 2.146939e+09 | 4.904609e+07 |
In [7]:
sampleSubmission.head(2)
Out[7]:
| segment_id | time_to_eruption | |
|---|---|---|
| 0 | 1000213997 | 0 |
| 1 | 100023368 | 0 |
In [8]:
sampleSubmission.info()
<class 'pandas.core.frame.DataFrame'> RangeIndex: 4520 entries, 0 to 4519 Data columns (total 2 columns): # Column Non-Null Count Dtype --- ------ -------------- ----- 0 segment_id 4520 non-null int64 1 time_to_eruption 4520 non-null int64 dtypes: int64(2) memory usage: 70.8 KB
In [9]:
log = trainLogPath + logsTrainList[0]
sequence = pd.read_csv(log)
sequence.describe()
Out[9]:
| sensor_1 | sensor_2 | sensor_3 | sensor_4 | sensor_5 | sensor_6 | sensor_7 | sensor_8 | sensor_9 | sensor_10 | |
|---|---|---|---|---|---|---|---|---|---|---|
| count | 60001.000000 | 60001.000000 | 0.0 | 60001.000000 | 60001.00000 | 60001.000000 | 60001.000000 | 60001.000000 | 0.0 | 60001.000000 |
| mean | 4.114265 | 3.180480 | NaN | 3.713188 | -0.39236 | -27.230496 | -6.301845 | -4.175564 | NaN | 8.997183 |
| std | 470.544946 | 1045.166153 | NaN | 469.713393 | 311.32671 | 1705.378236 | 541.081700 | 901.290059 | NaN | 927.946272 |
| min | -3891.000000 | -28726.000000 | NaN | -5282.000000 | -7223.00000 | -6189.000000 | -2455.000000 | -4704.000000 | NaN | -10709.000000 |
| 25% | -273.000000 | -248.000000 | NaN | -246.000000 | -109.00000 | -1197.000000 | -345.000000 | -600.000000 | NaN | -473.000000 |
| 50% | 0.000000 | 0.000000 | NaN | 0.000000 | 0.00000 | 0.000000 | 0.000000 | 0.000000 | NaN | 0.000000 |
| 75% | 286.000000 | 257.000000 | NaN | 250.000000 | 107.00000 | 1143.000000 | 337.000000 | 600.000000 | NaN | 487.000000 |
| max | 4065.000000 | 32767.000000 | NaN | 5610.000000 | 7244.00000 | 6149.000000 | 2268.000000 | 4789.000000 | NaN | 10389.000000 |
In [10]:
sequence.tail()
Out[10]:
| sensor_1 | sensor_2 | sensor_3 | sensor_4 | sensor_5 | sensor_6 | sensor_7 | sensor_8 | sensor_9 | sensor_10 | |
|---|---|---|---|---|---|---|---|---|---|---|
| 59996 | 232.0 | -151.0 | NaN | -192.0 | 126.0 | -1189.0 | -578.0 | 1592.0 | NaN | 232.0 |
| 59997 | 154.0 | -119.0 | NaN | -230.0 | 105.0 | -942.0 | -766.0 | 942.0 | NaN | 208.0 |
| 59998 | 376.0 | -67.0 | NaN | -285.0 | 25.0 | -747.0 | -958.0 | 559.0 | NaN | 265.0 |
| 59999 | 289.0 | -97.0 | NaN | -348.0 | -3.0 | -302.0 | -984.0 | 363.0 | NaN | 303.0 |
| 60000 | 222.0 | -70.0 | NaN | -369.0 | -44.0 | 238.0 | -707.0 | 609.0 | NaN | 301.0 |
In [11]:
print(sequence.dtypes.to_string())
print(' ')
# print(sequence.isnull().sum().to_string())
var = sequence.isnull().sum().tolist()
print(var)
sensor_1 float64 sensor_2 float64 sensor_3 float64 sensor_4 float64 sensor_5 float64 sensor_6 float64 sensor_7 float64 sensor_8 float64 sensor_9 float64 sensor_10 float64 [0, 0, 60001, 0, 0, 0, 0, 0, 60001, 0]
In [12]:
sequence.fillna(0).plot(subplots=True, figsize=(25, 10))
plt.tight_layout()
plt.show()
Check All of the Training Data for missing values and general behavior of the sensors, since all of the data is fragmented¶
In [13]:
logsTrainList
Out[13]:
['800654756.csv', '321543978.csv', '1417547769.csv', '729870090.csv', '830695026.csv', '1804779174.csv', '2146132452.csv', '1027307874.csv', '846647124.csv', '1973467302.csv', '922571639.csv', '710112502.csv', '2140509127.csv', '961651047.csv', '598266613.csv', '645591425.csv', '546732136.csv', '1249637406.csv', '286348387.csv', '1352085264.csv', '1121140466.csv', '556516545.csv', '420519707.csv', '1024522044.csv', '688646840.csv', '1831067564.csv', '2102079746.csv', '2107751377.csv', '268716817.csv', '873340274.csv', '1918352299.csv', '1489598665.csv', '609192146.csv', '1253627982.csv', '774503500.csv', '1519401781.csv', '785072836.csv', '208106303.csv', '807399710.csv', '1526747205.csv', '305204931.csv', '1235339888.csv', '191482132.csv', '1451062875.csv', '397127294.csv', '432516399.csv', '1474141102.csv', '655716117.csv', '2072126984.csv', '1297566199.csv', '1800749408.csv', '5460203.csv', '344335909.csv', '383842691.csv', '1828751957.csv', '1678614313.csv', '1731908944.csv', '132764109.csv', '211419569.csv', '1444387622.csv', '761490111.csv', '1298395396.csv', '1320498730.csv', '1459085269.csv', '1918360487.csv', '85810913.csv', '1955614886.csv', '1619573441.csv', '360262154.csv', '1563489982.csv', '1906505674.csv', '1096450417.csv', '27870347.csv', '686204475.csv', '682307156.csv', '1113243853.csv', '1945020467.csv', '71759446.csv', '942814455.csv', '44819727.csv', '1397959564.csv', '1171309166.csv', '1252913785.csv', '1426693444.csv', '25177348.csv', '785284985.csv', '1702619561.csv', '768372906.csv', '1710703034.csv', '1326807935.csv', '1914321864.csv', '381934185.csv', '1600768087.csv', '458682370.csv', '820409590.csv', '1479213552.csv', '1822328263.csv', '1004561781.csv', '1493638592.csv', '1915110800.csv', '1943373950.csv', '492142597.csv', '1199580311.csv', '335755738.csv', '107400998.csv', '669333382.csv', '2129202465.csv', '1462046575.csv', '1317025433.csv', '1995318007.csv', '810866813.csv', '1139102111.csv', '888093360.csv', '598097609.csv', 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'1770479433.csv', '1018435910.csv', '119249800.csv', '32512316.csv', '468381762.csv', '1297437712.csv', '92198020.csv', '942613600.csv', '807676191.csv', '1923868997.csv', '1422856161.csv', '1547755719.csv', '605498975.csv', '1241211907.csv', '282897271.csv', '761400898.csv', '1063425676.csv', '714430338.csv', '185583752.csv', '232805623.csv', '961267980.csv', '1704169438.csv', '911080236.csv', '1192605002.csv', '928777176.csv', '495316407.csv', '1402914692.csv', '349291703.csv', '1760235933.csv', '515581783.csv', '2143227248.csv', '1128186391.csv', '680492354.csv', '495434233.csv', '461089143.csv', '1074426665.csv', '357626827.csv', '792396274.csv', '306864913.csv', '844664347.csv', '1495126611.csv', '1371124950.csv', '1469153943.csv', '1281262417.csv', '1654655678.csv', '402646525.csv', '1112652101.csv', '1248739400.csv', '1707927431.csv', '341050644.csv', '832751522.csv', '596775154.csv', '2025261850.csv', '2051279869.csv', '325001188.csv', '775165856.csv', '1655117264.csv', '1424510231.csv', '1825350523.csv', '1972116695.csv', '1189625937.csv', '1258074117.csv', '301122706.csv', '827726394.csv', '1363345018.csv', '690551821.csv', '247145135.csv', '1047238065.csv', '697929895.csv', '1221036432.csv', '1156888333.csv', '564480285.csv', '968597742.csv', '1397536621.csv', '381232081.csv', '2079456865.csv', '2051910093.csv', '389254541.csv', '474052134.csv', '1549923926.csv', '2044769449.csv', '2067305346.csv', '550441831.csv', '1657113850.csv', '1266857808.csv', '545413269.csv', '1862197689.csv', '442797407.csv', '1697989660.csv', ...]
In [14]:
def missing_data_parser(filename, filepath):
log = filepath + filename
df = pd.read_csv(log)
var = df.isnull().sum().tolist()
return var
def missing_data_aggregator(trainList, filepath):
summary = []
for i in range(len(trainList)):
result = missing_data_parser(trainList[i], filepath)
summary.append(result)
return summary
In [15]:
result = missing_data_aggregator(logsTrainList,trainLogPath)
In [16]:
column_names = ['sensor_1', 'sensor_2', 'sensor_3', 'sensor_4', 'sensor_5','sensor_6', 'sensor_7',
'sensor_8', 'sensor_9', 'sensor_10']
result_df = pd.DataFrame(result, columns= column_names)
In [17]:
result_df.head()
Out[17]:
| sensor_1 | sensor_2 | sensor_3 | sensor_4 | sensor_5 | sensor_6 | sensor_7 | sensor_8 | sensor_9 | sensor_10 | |
|---|---|---|---|---|---|---|---|---|---|---|
| 0 | 0 | 0 | 60001 | 0 | 0 | 0 | 0 | 0 | 60001 | 0 |
| 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 2 | 0 | 60001 | 0 | 0 | 0 | 0 | 0 | 60001 | 0 | 0 |
| 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
In [18]:
result_df.head()
result_df.to_csv('missing_data_aggregate.csv', index=False)
In [19]:
#check = pd.read_csv('missing_data_aggregate.csv')
check = result_df
In [20]:
check.head()
Out[20]:
| sensor_1 | sensor_2 | sensor_3 | sensor_4 | sensor_5 | sensor_6 | sensor_7 | sensor_8 | sensor_9 | sensor_10 | |
|---|---|---|---|---|---|---|---|---|---|---|
| 0 | 0 | 0 | 60001 | 0 | 0 | 0 | 0 | 0 | 60001 | 0 |
| 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 2 | 0 | 60001 | 0 | 0 | 0 | 0 | 0 | 60001 | 0 | 0 |
| 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
In [21]:
missing_sensors_sum = pd.DataFrame(check.sum(axis=0))
In [22]:
missing_sensors_sum.reset_index(inplace=True)
In [23]:
missing_sensors_sum
Out[23]:
| index | 0 | |
|---|---|---|
| 0 | sensor_1 | 1545802 |
| 1 | sensor_2 | 50569629 |
| 2 | sensor_3 | 26499171 |
| 3 | sensor_4 | 6210 |
| 4 | sensor_5 | 49241506 |
| 5 | sensor_6 | 88904 |
| 6 | sensor_7 | 2546627 |
| 7 | sensor_8 | 26465572 |
| 8 | sensor_9 | 10520113 |
| 9 | sensor_10 | 1895973 |
In [24]:
plt.figure(figsize=(15,8))
sns.set_style("dark")
ax = sns.barplot(x="index", y=0,data=missing_sensors_sum)
Upon Inspection of the missing values in all of the log files in the training set, we can see that Sensor 2, Sensor 5, Sensor 8, Sensor 9 have the most amount of missing data.
High
- Sensor 2
- Sensor 5
Medium
- Sensor 3
- Sensor 8
- Sensor 9
Low
- Sensor 1
- Sensor 7
- Sensor 10
Dropping columns with immense amount of missing data is an attractive option, though instead we'll attempt to fix this with imputation techniques.
Determine appropriate imputation methods¶
- It might not be worthwhile to replace missing values with 0 because of time series data.
- It may be benefical to fill gaps forward and backwards
In [25]:
test = trainLogPath + logsTrainList[6]
df = pd.read_csv(test)
In [26]:
df.isnull().sum().to_string
Out[26]:
<bound method Series.to_string of sensor_1 0 sensor_2 0 sensor_3 60001 sensor_4 0 sensor_5 40420 sensor_6 0 sensor_7 0 sensor_8 0 sensor_9 0 sensor_10 0 dtype: int64>
In [27]:
df['sensor_9'].plot()
Out[27]:
<matplotlib.axes._subplots.AxesSubplot at 0x7f1f818dcc90>
In [28]:
df.interpolate(inplace=True)
df.fillna(0,inplace=True)
df.head()
Out[28]:
| sensor_1 | sensor_2 | sensor_3 | sensor_4 | sensor_5 | sensor_6 | sensor_7 | sensor_8 | sensor_9 | sensor_10 | |
|---|---|---|---|---|---|---|---|---|---|---|
| 0 | 149.0 | 150.0 | 0.0 | 569.0 | -117.0 | 922.0 | -425.0 | -271.0 | 248.0 | 69.0 |
| 1 | 209.0 | 138.0 | 0.0 | 539.0 | -67.0 | 923.0 | -268.0 | 349.0 | 202.0 | 211.0 |
| 2 | 196.0 | 107.0 | 0.0 | 390.0 | -42.0 | 889.0 | -61.0 | 848.0 | 138.0 | 375.0 |
| 3 | -99.0 | 66.0 | 0.0 | 231.0 | 17.0 | 737.0 | 183.0 | 631.0 | 90.0 | 463.0 |
| 4 | 260.0 | -40.0 | 0.0 | 82.0 | 106.0 | 390.0 | 463.0 | 506.0 | 57.0 | 561.0 |
In [29]:
df['sensor_9'].plot()
Out[29]:
<matplotlib.axes._subplots.AxesSubplot at 0x7f1f8102dbd0>
The Most Approptiate method would be to interpolate the missing data in columns and then fill the rest with Zeros that have signficant NaN Values.¶
Analyzing Outliers¶
In [30]:
f = plt.figure(figsize=(15, 10))
gs = f.add_gridspec(5, 2)
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[0, 0])
sns.boxplot( x= df['sensor_1'], orient='h')
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[0, 1])
sns.boxplot( x= df['sensor_2'], orient='h')
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[1, 0])
sns.boxplot( x= df['sensor_3'], orient='h')
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[1, 1])
sns.boxplot( x= df['sensor_4'], orient='h')
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[2, 0])
sns.boxplot( x= df['sensor_5'], orient='h')
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[2, 1])
sns.boxplot( x= df['sensor_6'], orient='h')
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[3, 0])
sns.boxplot( x= df['sensor_7'], orient='h')
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[3, 1])
sns.boxplot( x= df['sensor_8'], orient='h')
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[4, 0])
sns.boxplot( x= df['sensor_9'], orient='h')
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[4, 1])
sns.boxplot( x= df['sensor_10'], orient='h')
f.tight_layout()
In [31]:
f = plt.figure(figsize=(15, 10))
gs = f.add_gridspec(5, 2)
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[0, 0])
sns.distplot( df['sensor_1'], kde=True)
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[0, 1])
sns.distplot( df['sensor_2'],kde=True)
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[1, 0])
sns.distplot( df['sensor_3'],kde=True)
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[1, 1])
sns.distplot( df['sensor_4'],kde=True)
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[2, 0])
sns.distplot( df['sensor_5'],kde=True)
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[2, 1])
sns.distplot( df['sensor_6'],kde=True)
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[3, 0])
sns.distplot( df['sensor_7'],kde=True)
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[3, 1])
sns.distplot( df['sensor_8'],kde=True)
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[4, 0])
sns.distplot( df['sensor_9'],kde=True)
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[4, 1])
sns.distplot( df['sensor_10'],kde=True)
f.tight_layout()
/opt/conda/lib/python3.7/site-packages/seaborn/distributions.py:288: UserWarning: Data must have variance to compute a kernel density estimate. warnings.warn(msg, UserWarning)
Reviewing Data that has a z score greater than 3. The outliers would be able to captured, allowing us to review the behavior of the sensors during time of eruption¶
In [32]:
from scipy.stats import zscore
zscoredf = df.apply(zscore)
/opt/conda/lib/python3.7/site-packages/scipy/stats/stats.py:2419: RuntimeWarning: invalid value encountered in true_divide return (a - mns) / sstd
In [33]:
threshold = 3
sensor_1 = zscoredf[zscoredf['sensor_1']>=threshold]
sensor_2 = zscoredf[zscoredf['sensor_2']>=threshold]
sensor_3 = zscoredf[zscoredf['sensor_3']>=threshold]
sensor_4 = zscoredf[zscoredf['sensor_4']>=threshold]
sensor_5 = zscoredf[zscoredf['sensor_5']>=threshold]
sensor_6 = zscoredf[zscoredf['sensor_6']>=threshold]
sensor_7 = zscoredf[zscoredf['sensor_6']>=threshold]
sensor_8 = zscoredf[zscoredf['sensor_8']>=threshold]
sensor_9 = zscoredf[zscoredf['sensor_9']>=threshold]
sensor_10 = zscoredf[zscoredf['sensor_10']>=threshold]
ind_list1 = sensor_1.index.to_list()
ind_list2 = sensor_2.index.to_list()
ind_list3 = sensor_3.index.to_list()
ind_list4 = sensor_4.index.to_list()
ind_list5 = sensor_5.index.to_list()
ind_list6 = sensor_6.index.to_list()
ind_list7 = sensor_7.index.to_list()
ind_list8 = sensor_8.index.to_list()
ind_list9 = sensor_9.index.to_list()
ind_list10 = sensor_10.index.to_list()
In [34]:
f = plt.figure(figsize=(15, 10))
gs = f.add_gridspec(5, 2)
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[0, 0])
test = df['sensor_1'].iloc[ind_list1].to_list()
val = len(test)
x = np.linspace(0,2*np.pi,val)
sns.lineplot( x=x,y= df['sensor_1'].iloc[ind_list1], dashes = False)
plt.legend(labels=['sensor_1'])
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[0, 1])
test = df['sensor_2'].iloc[ind_list2].to_list()
val = len(test)
x = np.linspace(0,2*np.pi,val)
sns.lineplot( x=x,y= df['sensor_2'].iloc[ind_list2])
plt.legend(labels=['sensor_2'])
with sns.axes_style("darkgrid"):
test = df['sensor_3'].iloc[ind_list3].to_list()
val = len(test)
x = np.linspace(0,2*np.pi,val)
ax = f.add_subplot(gs[1, 0])
sns.lineplot( x=x,y= df['sensor_3'].iloc[ind_list3])
plt.legend(labels=['sensor_3'])
with sns.axes_style("darkgrid"):
test = df['sensor_4'].iloc[ind_list4].to_list()
val = len(test)
x = np.linspace(0,2*np.pi,val)
ax = f.add_subplot(gs[1, 1])
sns.lineplot( x=x, y= df['sensor_4'].iloc[ind_list4])
plt.legend(labels=['sensor_4'])
with sns.axes_style("darkgrid"):
test = df['sensor_5'].iloc[ind_list5].to_list()
val = len(test)
x = np.linspace(0,2*np.pi,val)
ax = f.add_subplot(gs[2, 0])
sns.lineplot( x=x, y= df['sensor_5'].iloc[ind_list5])
plt.legend(labels=['sensor_5'])
with sns.axes_style("darkgrid"):
test = df['sensor_6'].iloc[ind_list6].to_list()
val = len(test)
x = np.linspace(0,2*np.pi,val)
ax = f.add_subplot(gs[2, 1])
sns.lineplot( x=x,y= df['sensor_6'].iloc[ind_list6])
plt.legend(labels=['sensor_6'])
with sns.axes_style("darkgrid"):
test = df['sensor_7'].iloc[ind_list7].to_list()
val = len(test)
x = np.linspace(0,2*np.pi,val)
ax = f.add_subplot(gs[3, 0])
sns.lineplot( x=x,y= df['sensor_7'].iloc[ind_list7])
plt.legend(labels=['sensor_7'])
with sns.axes_style("darkgrid"):
test = df['sensor_8'].iloc[ind_list8].to_list()
val = len(test)
x = np.linspace(0,2*np.pi,val)
ax = f.add_subplot(gs[3, 1])
sns.lineplot( x=x,y= df['sensor_8'].iloc[ind_list8])
plt.legend(labels=['sensor_8'])
with sns.axes_style("darkgrid"):
test = df['sensor_9'].iloc[ind_list9].to_list()
val = len(test)
x = np.linspace(0,2*np.pi,val)
ax = f.add_subplot(gs[4, 0])
sns.lineplot( x=x,y= df['sensor_9'].iloc[ind_list9])
plt.legend(labels=['sensor_9'])
with sns.axes_style("darkgrid"):
test = df['sensor_10'].iloc[ind_list10].to_list()
val = len(test)
x = np.linspace(0,2*np.pi,val)
ax = f.add_subplot(gs[4, 1])
sns.lineplot( x=x, y= df['sensor_10'].iloc[ind_list10])
plt.legend(labels=['sensor_10'])
f.tight_layout()
In [ ]:
In [35]:
f = plt.figure(figsize=(20, 25))
gs = f.add_gridspec(5, 2)
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[0, 0])
sns.lineplot( data= df.iloc[ind_list1], dashes = False)
# plt.legend(labels=['sensor_1'])
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[0, 1])
sns.lineplot( data= df.iloc[ind_list2],dashes = False)
# plt.legend(labels=['sensor_2'])
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[1, 0])
sns.lineplot( data= df.iloc[ind_list3],dashes = False)
# plt.legend(labels=['sensor_3'])
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[1, 1])
sns.lineplot( data= df.iloc[ind_list4],dashes = False)
# plt.legend(labels=['sensor_4'])
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[2, 0])
sns.lineplot( data= df.iloc[ind_list5],dashes = False)
# plt.legend(labels=['sensor_5'])
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[2, 1])
sns.lineplot( data= df.iloc[ind_list6],dashes = False)
# plt.legend(labels=['sensor_6'])
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[3, 0])
sns.lineplot( data= df.iloc[ind_list7],dashes = False)
# plt.legend(labels=['sensor_7'])
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[3, 1])
sns.lineplot( data= df.iloc[ind_list8],dashes = False)
# plt.legend(labels=['sensor_8'])
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[4, 0])
sns.lineplot( data= df.iloc[ind_list9],dashes = False)
# plt.legend(labels=['sensor_9'])
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[4, 1])
sns.lineplot( data= df.iloc[ind_list10],dashes = False)
# plt.legend(labels=['sensor_10'])
f.tight_layout()
In [36]:
from scipy.signal import savgol_filter
test= df['sensor_1'].iloc[ind_list1].to_list()
In [37]:
blankDf = pd.DataFrame()
# indexer = pd.api.indexers.FixedForwardWindowIndexer(window_size=2)
val = len(test)
x = np.linspace(0,2*np.pi,val)
# y = np.sin(x) + np.random.random(100) * 0.2
# blankDf['Close_Sg'] = savgol_filter(test, 1001, 1)
yhat = savgol_filter(test, 51, 3) # window size 51, polynomial order 3
plt.plot(x,test)
plt.plot(x,yhat, color='red')
plt.show()
In [38]:
f = plt.figure(figsize=(20, 25))
gs = f.add_gridspec(5, 2)
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[0, 0])
sns.lineplot( x,yhat, dashes = False)
# plt.legend(labels=['sensor_1'])
In [39]:
data= df.iloc[ind_list1]
data.head()
# yhat = savgol_filter(data, 51, 3)
Out[39]:
| sensor_1 | sensor_2 | sensor_3 | sensor_4 | sensor_5 | sensor_6 | sensor_7 | sensor_8 | sensor_9 | sensor_10 | |
|---|---|---|---|---|---|---|---|---|---|---|
| 2345 | 1226.0 | -55.0 | 0.0 | 247.0 | 208.0 | -505.0 | 559.0 | 164.0 | 221.0 | 532.0 |
| 10206 | 1123.0 | -179.0 | 0.0 | -571.0 | -19.0 | 654.0 | -363.0 | 570.0 | 605.0 | -687.0 |
| 10208 | 1038.0 | -165.0 | 0.0 | -508.0 | -43.0 | 824.0 | -90.0 | 439.0 | 527.0 | -687.0 |
| 10266 | 1013.0 | 439.0 | 0.0 | 327.0 | 4.0 | 439.0 | 403.0 | -395.0 | 217.0 | -499.0 |
| 10271 | 1066.0 | 321.0 | 0.0 | -368.0 | -8.0 | -228.0 | 191.0 | 737.0 | 74.0 | -797.0 |
In [40]:
# data.head()
def my_filter(x):
return savgol_filter(x, 51, 3)
# alldata_smoothed = data.apply(my_filter)
In [41]:
# val = len(alldata_smoothed)
# x = np.linspace(0,2*np.pi,val)
# sns.lineplot( data= alldata_smoothed, x=x ,dashes = False)
In [42]:
# df.drop(['SMA_10'],axis=1,inplace=True)
f = plt.figure(figsize=(20, 25))
gs = f.add_gridspec(5, 2)
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[0, 0])
data= df.iloc[ind_list1]
test= df['sensor_1'].iloc[ind_list1].to_list()
alldata_smoothed = data.apply(my_filter)
val = len(test)
x = np.linspace(0,2*np.pi,val)
sns.lineplot( x, alldata_smoothed['sensor_1'], dashes = False)
sns.lineplot( x ,alldata_smoothed['sensor_2'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_3'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_4'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_5'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_6'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_7'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_8'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_9'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_10'], dashes = False)
In [43]:
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[0, 0])
data= df.iloc[ind_list2]
test= df['sensor_2'].iloc[ind_list2].to_list()
alldata_smoothed = data.apply(my_filter)
val = len(test)
x = np.linspace(0,2*np.pi,val)
sns.lineplot( x, alldata_smoothed['sensor_1'], dashes = False)
sns.lineplot( x ,alldata_smoothed['sensor_2'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_3'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_4'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_5'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_6'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_7'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_8'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_9'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_10'], dashes = False)
/opt/conda/lib/python3.7/site-packages/ipykernel_launcher.py:2: MatplotlibDeprecationWarning: Adding an axes using the same arguments as a previous axes currently reuses the earlier instance. In a future version, a new instance will always be created and returned. Meanwhile, this warning can be suppressed, and the future behavior ensured, by passing a unique label to each axes instance.
In [44]:
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[0, 0])
data= df.iloc[ind_list3]
test= df['sensor_3'].iloc[ind_list3].to_list()
alldata_smoothed = data.apply(my_filter)
val = len(test)
x = np.linspace(0,2*np.pi,val)
sns.lineplot( x, alldata_smoothed['sensor_1'], dashes = False)
sns.lineplot( x ,alldata_smoothed['sensor_2'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_3'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_4'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_5'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_6'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_7'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_8'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_9'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_10'], dashes = False)
/opt/conda/lib/python3.7/site-packages/ipykernel_launcher.py:2: MatplotlibDeprecationWarning: Adding an axes using the same arguments as a previous axes currently reuses the earlier instance. In a future version, a new instance will always be created and returned. Meanwhile, this warning can be suppressed, and the future behavior ensured, by passing a unique label to each axes instance.
In [45]:
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[0, 0])
data= df.iloc[ind_list4]
test= df['sensor_4'].iloc[ind_list4].to_list()
alldata_smoothed = data.apply(my_filter)
val = len(test)
x = np.linspace(0,2*np.pi,val)
sns.lineplot( x, alldata_smoothed['sensor_1'], dashes = False)
sns.lineplot( x ,alldata_smoothed['sensor_2'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_3'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_4'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_5'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_6'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_7'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_8'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_9'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_10'], dashes = False)
/opt/conda/lib/python3.7/site-packages/ipykernel_launcher.py:2: MatplotlibDeprecationWarning: Adding an axes using the same arguments as a previous axes currently reuses the earlier instance. In a future version, a new instance will always be created and returned. Meanwhile, this warning can be suppressed, and the future behavior ensured, by passing a unique label to each axes instance.
In [46]:
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[0, 0])
data= df.iloc[ind_list5]
test= df['sensor_5'].iloc[ind_list5].to_list()
alldata_smoothed = data.apply(my_filter)
val = len(test)
x = np.linspace(0,2*np.pi,val)
sns.lineplot( x, alldata_smoothed['sensor_1'], dashes = False)
sns.lineplot( x ,alldata_smoothed['sensor_2'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_3'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_4'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_5'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_6'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_7'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_8'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_9'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_10'], dashes = False)
/opt/conda/lib/python3.7/site-packages/ipykernel_launcher.py:2: MatplotlibDeprecationWarning: Adding an axes using the same arguments as a previous axes currently reuses the earlier instance. In a future version, a new instance will always be created and returned. Meanwhile, this warning can be suppressed, and the future behavior ensured, by passing a unique label to each axes instance.
In [47]:
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[0, 0])
data= df.iloc[ind_list6]
test= df['sensor_6'].iloc[ind_list6].to_list()
alldata_smoothed = data.apply(my_filter)
val = len(test)
x = np.linspace(0,2*np.pi,val)
sns.lineplot( x, alldata_smoothed['sensor_1'], dashes = False)
sns.lineplot( x ,alldata_smoothed['sensor_2'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_3'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_4'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_5'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_6'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_7'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_8'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_9'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_10'], dashes = False)
/opt/conda/lib/python3.7/site-packages/ipykernel_launcher.py:2: MatplotlibDeprecationWarning: Adding an axes using the same arguments as a previous axes currently reuses the earlier instance. In a future version, a new instance will always be created and returned. Meanwhile, this warning can be suppressed, and the future behavior ensured, by passing a unique label to each axes instance.
In [48]:
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[0, 0])
data= df.iloc[ind_list7]
test= df['sensor_7'].iloc[ind_list7].to_list()
alldata_smoothed = data.apply(my_filter)
val = len(test)
x = np.linspace(0,2*np.pi,val)
sns.lineplot( x, alldata_smoothed['sensor_1'], dashes = False)
sns.lineplot( x ,alldata_smoothed['sensor_2'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_3'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_4'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_5'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_6'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_7'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_8'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_9'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_10'], dashes = False)
/opt/conda/lib/python3.7/site-packages/ipykernel_launcher.py:2: MatplotlibDeprecationWarning: Adding an axes using the same arguments as a previous axes currently reuses the earlier instance. In a future version, a new instance will always be created and returned. Meanwhile, this warning can be suppressed, and the future behavior ensured, by passing a unique label to each axes instance.
In [49]:
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[0, 0])
data= df.iloc[ind_list8]
test= df['sensor_8'].iloc[ind_list8].to_list()
alldata_smoothed = data.apply(my_filter)
val = len(test)
x = np.linspace(0,2*np.pi,val)
sns.lineplot( x, alldata_smoothed['sensor_1'], dashes = False)
sns.lineplot( x ,alldata_smoothed['sensor_2'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_3'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_4'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_5'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_6'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_7'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_8'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_9'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_10'], dashes = False)
/opt/conda/lib/python3.7/site-packages/ipykernel_launcher.py:2: MatplotlibDeprecationWarning: Adding an axes using the same arguments as a previous axes currently reuses the earlier instance. In a future version, a new instance will always be created and returned. Meanwhile, this warning can be suppressed, and the future behavior ensured, by passing a unique label to each axes instance.
In [50]:
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[0, 0])
data= df.iloc[ind_list9]
test= df['sensor_9'].iloc[ind_list9].to_list()
alldata_smoothed = data.apply(my_filter)
val = len(test)
x = np.linspace(0,2*np.pi,val)
sns.lineplot( x, alldata_smoothed['sensor_1'], dashes = False)
sns.lineplot( x ,alldata_smoothed['sensor_2'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_3'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_4'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_5'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_6'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_7'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_8'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_9'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_10'], dashes = False)
/opt/conda/lib/python3.7/site-packages/ipykernel_launcher.py:2: MatplotlibDeprecationWarning: Adding an axes using the same arguments as a previous axes currently reuses the earlier instance. In a future version, a new instance will always be created and returned. Meanwhile, this warning can be suppressed, and the future behavior ensured, by passing a unique label to each axes instance.
In [51]:
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[0, 0])
data= df.iloc[ind_list10]
test= df['sensor_10'].iloc[ind_list10].to_list()
alldata_smoothed = data.apply(my_filter)
val = len(test)
x = np.linspace(0,2*np.pi,val)
sns.lineplot( x, alldata_smoothed['sensor_1'], dashes = False)
sns.lineplot( x ,alldata_smoothed['sensor_2'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_3'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_4'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_5'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_6'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_7'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_8'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_9'], dashes = False)
sns.lineplot( x,alldata_smoothed['sensor_10'], dashes = False)
/opt/conda/lib/python3.7/site-packages/ipykernel_launcher.py:2: MatplotlibDeprecationWarning: Adding an axes using the same arguments as a previous axes currently reuses the earlier instance. In a future version, a new instance will always be created and returned. Meanwhile, this warning can be suppressed, and the future behavior ensured, by passing a unique label to each axes instance.
In [52]:
threshold = 3
sensor_1 = zscoredf[zscoredf['sensor_1']<=threshold]
sensor_2 = zscoredf[zscoredf['sensor_2']<=threshold]
sensor_3 = zscoredf[zscoredf['sensor_3']<=threshold]
sensor_4 = zscoredf[zscoredf['sensor_4']<=threshold]
sensor_5 = zscoredf[zscoredf['sensor_5']<=threshold]
sensor_6 = zscoredf[zscoredf['sensor_6']<=threshold]
sensor_7 = zscoredf[zscoredf['sensor_6']<=threshold]
sensor_8 = zscoredf[zscoredf['sensor_8']<=threshold]
sensor_9 = zscoredf[zscoredf['sensor_9']<=threshold]
sensor_10 = zscoredf[zscoredf['sensor_10']<=threshold]
ind_list1 = sensor_1.index.to_list()
ind_list2 = sensor_2.index.to_list()
ind_list3 = sensor_3.index.to_list()
ind_list4 = sensor_4.index.to_list()
ind_list5 = sensor_5.index.to_list()
ind_list6 = sensor_6.index.to_list()
ind_list7 = sensor_7.index.to_list()
ind_list8 = sensor_8.index.to_list()
ind_list9 = sensor_9.index.to_list()
ind_list10 = sensor_10.index.to_list()
In [53]:
f = plt.figure(figsize=(15, 10))
gs = f.add_gridspec(5, 2)
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[0, 0])
test = df['sensor_1'].iloc[ind_list1].to_list()
val = len(test)
x = np.linspace(0,2*np.pi,val)
sns.lineplot( x=x,y= df['sensor_1'].iloc[ind_list1], dashes = False)
plt.legend(labels=['sensor_1'])
with sns.axes_style("darkgrid"):
ax = f.add_subplot(gs[0, 1])
test = df['sensor_2'].iloc[ind_list2].to_list()
val = len(test)
x = np.linspace(0,2*np.pi,val)
sns.lineplot( x=x,y= df['sensor_2'].iloc[ind_list2])
plt.legend(labels=['sensor_2'])
with sns.axes_style("darkgrid"):
test = df['sensor_3'].iloc[ind_list3].to_list()
val = len(test)
x = np.linspace(0,2*np.pi,val)
ax = f.add_subplot(gs[1, 0])
sns.lineplot( x=x,y= df['sensor_3'].iloc[ind_list3])
plt.legend(labels=['sensor_3'])
with sns.axes_style("darkgrid"):
test = df['sensor_4'].iloc[ind_list4].to_list()
val = len(test)
x = np.linspace(0,2*np.pi,val)
ax = f.add_subplot(gs[1, 1])
sns.lineplot( x=x, y= df['sensor_4'].iloc[ind_list4])
plt.legend(labels=['sensor_4'])
with sns.axes_style("darkgrid"):
test = df['sensor_5'].iloc[ind_list5].to_list()
val = len(test)
x = np.linspace(0,2*np.pi,val)
ax = f.add_subplot(gs[2, 0])
sns.lineplot( x=x, y= df['sensor_5'].iloc[ind_list5])
plt.legend(labels=['sensor_5'])
with sns.axes_style("darkgrid"):
test = df['sensor_6'].iloc[ind_list6].to_list()
val = len(test)
x = np.linspace(0,2*np.pi,val)
ax = f.add_subplot(gs[2, 1])
sns.lineplot( x=x,y= df['sensor_6'].iloc[ind_list6])
plt.legend(labels=['sensor_6'])
with sns.axes_style("darkgrid"):
test = df['sensor_7'].iloc[ind_list7].to_list()
val = len(test)
x = np.linspace(0,2*np.pi,val)
ax = f.add_subplot(gs[3, 0])
sns.lineplot( x=x,y= df['sensor_7'].iloc[ind_list7])
plt.legend(labels=['sensor_7'])
with sns.axes_style("darkgrid"):
test = df['sensor_8'].iloc[ind_list8].to_list()
val = len(test)
x = np.linspace(0,2*np.pi,val)
ax = f.add_subplot(gs[3, 1])
sns.lineplot( x=x,y= df['sensor_8'].iloc[ind_list8])
plt.legend(labels=['sensor_8'])
with sns.axes_style("darkgrid"):
test = df['sensor_9'].iloc[ind_list9].to_list()
val = len(test)
x = np.linspace(0,2*np.pi,val)
ax = f.add_subplot(gs[4, 0])
sns.lineplot( x=x,y= df['sensor_9'].iloc[ind_list9])
plt.legend(labels=['sensor_9'])
with sns.axes_style("darkgrid"):
test = df['sensor_10'].iloc[ind_list10].to_list()
val = len(test)
x = np.linspace(0,2*np.pi,val)
ax = f.add_subplot(gs[4, 1])
sns.lineplot( x=x, y= df['sensor_10'].iloc[ind_list10])
plt.legend(labels=['sensor_10'])
f.tight_layout()
Apply imputation on training files¶
In [54]:
def impute_data_parser(filename, filepath, train):
log = filepath + filename
df = pd.read_csv(log)
df.interpolate(inplace=True)
df.fillna(0,inplace=True)
df.sum()
df.mean()
df.min()
df.max()
df.mode()
df.std()
df.var()
df.sem()
df.skew()
df.kurt()
df.var()
df.quantile(0.95)
df.quantile(0.05)
Q1 = df.quantile(0.25)
Q3 = df.quantile(0.75)
IQR = Q3 - Q1
return df
def missing_data_aggregator(trainList, filepath):
summary = []
# for i in range(len(trainList)):
# result = missing_data_parser(trainList[i], filepath)
# summary.append(result)
return summary
In [55]:
#test = impute_data_parser(train[0,logsTrainList[2],trainLogPath, train[:1])
In [56]:
#type(test.kurt())
In [57]:
#train.head()
In [58]:
# a = test.kurt().to_frame()
# b = a.T
In [59]:
# result = pd.concat([train[:1], a.T],axis=1)
# result
In [60]:
def create_features(index, train_sel=1):
ser = pd.Series()
dir = "/kaggle/input/predict-volcanic-eruptions-ingv-oe/"
if(train_sel ==1):
subdir = "train/"
segmentid = train.loc[index]["segment_id"]
ttr = train.loc[index]["time_to_eruption"]
else:
subdir = "test/"
segmentid = test.loc[index]["segment_id"]
ttr = test.loc[index]["time_to_eruption"]
log = dir + subdir + str(segmentid) + ".csv"
df = pd.read_csv(log)
df.interpolate(inplace=True)
df.fillna(0,inplace=True)
ser["segment_id"] = segmentid
ser["time_to_eruption"] = ttr
for sensor in df.columns:
ser[sensor+"_max"] = df[sensor].max()
ser[sensor+"_min"] = df[sensor].min()
ser[sensor+"_sum"] = df[sensor].sum()
ser[sensor+ "_mean"] = df[sensor].mean()
ser[sensor+ "_mode"] = df[sensor].mode()
ser[sensor+ "_std"] = df[sensor].std()
ser[sensor+ "_var"] = df[sensor].var()
ser[sensor+ "_sem"] = df[sensor].sem()
ser[sensor+ "_skew"] = df[sensor].skew()
ser[sensor+ "_kurt"] = df[sensor].kurt()
ser[sensor+ "_HQ"] = df[sensor].quantile(0.95)
ser[sensor+ "_LQ"] = df[sensor].quantile(0.05)
ser[sensor+ "_Q1"] = df.quantile(0.25)
ser[sensor+ "_Q3"] = df.quantile(0.75)
ser[sensor+ "_IQR"] = ser[sensor+ "_Q3"] - ser[sensor+ "_Q1"]
return ser
In [61]:
train_with_features = pd.DataFrame()
for index in train.index:
#for index in range(0,5) :
ser2 = create_features(index)
temp = pd.DataFrame(ser2)
temp1 = temp.transpose()
train_with_features = pd.concat([train_with_features,temp1],axis=0)
/opt/conda/lib/python3.7/site-packages/ipykernel_launcher.py:3: DeprecationWarning: The default dtype for empty Series will be 'object' instead of 'float64' in a future version. Specify a dtype explicitly to silence this warning. This is separate from the ipykernel package so we can avoid doing imports until
In [62]:
train_with_features.reset_index(inplace=True)
In [63]:
train_with_features.drop(["index"],axis=1,inplace=True)
In [64]:
def column_numeric_filter(columnslist, train_with_features):
for i in range(len(columnslist)):
try:
train_with_features[columnslist[i]] = pd.to_numeric(train_with_features[columnslist[i]])
except:
TypeError
continue
return
columnslist = train_with_features.columns.tolist()
column_numeric_filter(columnslist, train_with_features)
print(train_with_features.dtypes.to_string())
segment_id float64 time_to_eruption float64 sensor_1_max float64 sensor_1_min float64 sensor_1_sum float64 sensor_1_mean float64 sensor_1_mode object sensor_1_std float64 sensor_1_var float64 sensor_1_sem float64 sensor_1_skew float64 sensor_1_kurt float64 sensor_1_HQ float64 sensor_1_LQ float64 sensor_1_Q1 object sensor_1_Q3 object sensor_1_IQR object sensor_2_max float64 sensor_2_min float64 sensor_2_sum float64 sensor_2_mean float64 sensor_2_mode object sensor_2_std float64 sensor_2_var float64 sensor_2_sem float64 sensor_2_skew float64 sensor_2_kurt float64 sensor_2_HQ float64 sensor_2_LQ float64 sensor_2_Q1 object sensor_2_Q3 object sensor_2_IQR object sensor_3_max float64 sensor_3_min float64 sensor_3_sum float64 sensor_3_mean float64 sensor_3_mode object sensor_3_std float64 sensor_3_var float64 sensor_3_sem float64 sensor_3_skew float64 sensor_3_kurt float64 sensor_3_HQ float64 sensor_3_LQ float64 sensor_3_Q1 object sensor_3_Q3 object sensor_3_IQR object sensor_4_max float64 sensor_4_min float64 sensor_4_sum float64 sensor_4_mean float64 sensor_4_mode object sensor_4_std float64 sensor_4_var float64 sensor_4_sem float64 sensor_4_skew float64 sensor_4_kurt float64 sensor_4_HQ float64 sensor_4_LQ float64 sensor_4_Q1 object sensor_4_Q3 object sensor_4_IQR object sensor_5_max float64 sensor_5_min float64 sensor_5_sum float64 sensor_5_mean float64 sensor_5_mode object sensor_5_std float64 sensor_5_var float64 sensor_5_sem float64 sensor_5_skew float64 sensor_5_kurt float64 sensor_5_HQ float64 sensor_5_LQ float64 sensor_5_Q1 object sensor_5_Q3 object sensor_5_IQR object sensor_6_max float64 sensor_6_min float64 sensor_6_sum float64 sensor_6_mean float64 sensor_6_mode object sensor_6_std float64 sensor_6_var float64 sensor_6_sem float64 sensor_6_skew float64 sensor_6_kurt float64 sensor_6_HQ float64 sensor_6_LQ float64 sensor_6_Q1 object sensor_6_Q3 object sensor_6_IQR object sensor_7_max float64 sensor_7_min float64 sensor_7_sum float64 sensor_7_mean float64 sensor_7_mode object sensor_7_std float64 sensor_7_var float64 sensor_7_sem float64 sensor_7_skew float64 sensor_7_kurt float64 sensor_7_HQ float64 sensor_7_LQ float64 sensor_7_Q1 object sensor_7_Q3 object sensor_7_IQR object sensor_8_max float64 sensor_8_min float64 sensor_8_sum float64 sensor_8_mean float64 sensor_8_mode object sensor_8_std float64 sensor_8_var float64 sensor_8_sem float64 sensor_8_skew float64 sensor_8_kurt float64 sensor_8_HQ float64 sensor_8_LQ float64 sensor_8_Q1 object sensor_8_Q3 object sensor_8_IQR object sensor_9_max float64 sensor_9_min float64 sensor_9_sum float64 sensor_9_mean float64 sensor_9_mode object sensor_9_std float64 sensor_9_var float64 sensor_9_sem float64 sensor_9_skew float64 sensor_9_kurt float64 sensor_9_HQ float64 sensor_9_LQ float64 sensor_9_Q1 object sensor_9_Q3 object sensor_9_IQR object sensor_10_max float64 sensor_10_min float64 sensor_10_sum float64 sensor_10_mean float64 sensor_10_mode object sensor_10_std float64 sensor_10_var float64 sensor_10_sem float64 sensor_10_skew float64 sensor_10_kurt float64 sensor_10_HQ float64 sensor_10_LQ float64 sensor_10_Q1 object sensor_10_Q3 object sensor_10_IQR object
Feature Importance
In [65]:
df_num = train_with_features.select_dtypes(include=[np.float, np.int64,np.int])
df_num.head()
Out[65]:
| segment_id | time_to_eruption | sensor_1_max | sensor_1_min | sensor_1_sum | sensor_1_mean | sensor_1_std | sensor_1_var | sensor_1_sem | sensor_1_skew | ... | sensor_10_min | sensor_10_sum | sensor_10_mean | sensor_10_std | sensor_10_var | sensor_10_sem | sensor_10_skew | sensor_10_kurt | sensor_10_HQ | sensor_10_LQ | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | 1.136038e+09 | 12262005.0 | 1353.0 | -1421.0 | -96621.0 | -1.610323 | 303.096099 | 91867.245099 | 1.237374 | -0.057494 | ... | -3527.0 | 155969.0 | 2.599440 | 596.865818 | 356248.804616 | 2.436674 | -0.048443 | 0.102101 | 992.0 | -966.0 |
| 1 | 1.969648e+09 | 32739612.0 | 2197.0 | -2005.0 | 85569.0 | 1.426126 | 438.360560 | 192159.980413 | 1.789585 | -0.001189 | ... | -4591.0 | 1193751.0 | 19.895518 | 932.699662 | 869928.658933 | 3.807699 | 0.202520 | 1.607990 | 1549.0 | -1448.0 |
| 2 | 1.895880e+09 | 14965999.0 | 1148.0 | -1115.0 | 150278.0 | 2.504592 | 241.575415 | 58358.681050 | 0.986219 | 0.071632 | ... | -2798.0 | 58087.0 | 0.968101 | 500.544892 | 250545.188582 | 2.043449 | 0.007192 | 0.615849 | 822.0 | -806.0 |
| 3 | 2.068207e+09 | 26469720.0 | 1254.0 | -1025.0 | 129950.0 | 2.165797 | 221.967825 | 49269.715377 | 0.906172 | 0.123639 | ... | -2911.0 | 502895.0 | 8.381444 | 523.449843 | 273999.738548 | 2.136957 | 0.229183 | 1.409321 | 869.0 | -828.0 |
| 4 | 1.929556e+08 | 31072429.0 | 1114.0 | -1190.0 | 4429.0 | 0.073815 | 261.695935 | 68484.762635 | 1.068360 | 0.006594 | ... | -2611.0 | -224432.0 | -3.740471 | 562.748316 | 316685.667577 | 2.297391 | -0.014160 | 0.483804 | 915.0 | -934.0 |
5 rows × 112 columns
In [66]:
# Normalize the dataset
x = df_num.values
min_max_scaler = preprocessing.MinMaxScaler()
x_scaled = min_max_scaler.fit_transform(x)
df = pd.DataFrame(x_scaled, columns=df_num.columns)
X = df.drop(columns='time_to_eruption')
y = df_num['time_to_eruption']
# print(X.isnull().sum().to_string())
y.isnull().sum()
from sklearn.ensemble import RandomForestRegressor
regressor = RandomForestRegressor(n_estimators=10, random_state = 0)
regressor.fit(X,y)
features = X.columns
importances = regressor.feature_importances_
indices = np.argsort(importances)[-10:] # top 10 features
plt.title('Feature Importances')
plt.barh(range(len(indices)), importances[indices], color='b', align='center')
plt.yticks(range(len(indices)), [features[i] for i in indices])
plt.xlabel('Relative Importance')
plt.show()
Unsupervised models¶
K-means¶
In [69]:
topTenFeatures = []
for i in indices:
topTenFeatures.append(features[i])
topX = X[topTenFeatures]
In [108]:
from sklearn.cluster import KMeans
kmeans = KMeans(n_clusters=3)
In [81]:
sse = []
for k in range(1, 20):
kmeans = KMeans(n_clusters=k)
kmeans.fit(topX)
sse.append(kmeans.inertia_)
In [82]:
plt.plot(range(1, 20), sse)
plt.xticks(range(1, 20))
plt.xlabel("Number of Clusters")
plt.ylabel("SSE")
plt.show()
In [95]:
# Dimensionality Reduction
from sklearn.decomposition import PCA
unSupPca = PCA()
xUnSupPca = unSupPca.fit_transform(topX)
xUnSupPca = pd.DataFrame(xUnSupPca)
xUnSupPca.var()
lowVarianceColumns = [3,4,5,6,7,8,9]
xUnSupPca.drop(columns= lowVarianceColumns, inplace=True)
xUnSupPca.head()
Out[95]:
| 0 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | |
|---|---|---|---|---|---|---|---|---|---|---|
| 0 | -0.031542 | -0.023103 | 0.006595 | -0.011663 | -0.003207 | 0.001044 | 0.002243 | 0.006618 | 0.001997 | -7.295990e-04 |
| 1 | -0.034134 | -0.029238 | -0.009815 | 0.010694 | -0.001510 | -0.006769 | -0.001812 | -0.002260 | -0.001704 | -1.345030e-03 |
| 2 | -0.035442 | -0.020390 | -0.012954 | -0.010917 | -0.003315 | -0.000796 | 0.002103 | 0.006323 | 0.003271 | -8.228136e-04 |
| 3 | -0.054880 | -0.029549 | -0.005086 | 0.007619 | -0.002307 | -0.005392 | 0.000304 | -0.000039 | -0.001183 | 3.629444e-07 |
| 4 | -0.067718 | -0.030401 | 0.021013 | 0.015441 | -0.004377 | -0.008132 | 0.000391 | -0.001682 | -0.002306 | -1.384229e-07 |
In [139]:
kmeans = KMeans(n_clusters=2)
kmeans.fit(xUnSupPca)
k_means_prediction = kmeans.predict(xUnSupPca)
print(k_means_prediction)
plt.scatter(xUnSupPca.iloc[:,0], xUnSupPca.iloc[:,1],c=kmeans.predict(xUnSupPca), s=20)
from mpl_toolkits.mplot3d import Axes3D
fig=plt.figure()
ax = fig.add_subplot(111, projection = '3d')
ax.scatter(xs = xUnSupPca.iloc[:,0] , ys =xUnSupPca.iloc[:,1], zs = xUnSupPca.iloc[:,2], c=kmeans.predict(xUnSupPca), s=20)
[1 1 1 ... 1 1 1]
Out[139]:
<mpl_toolkits.mplot3d.art3d.Path3DCollection at 0x7f1f3dde9e10>
Silhouette Score of Kmeans¶
In [138]:
from sklearn.metrics import silhouette_score
range_n_clusters = [2, 3, 4, 5, 6]
for n_cluster in range_n_clusters:
kmeans = KMeans(n_clusters=n_cluster)
kmeans.fit(xUnSupPca)
labels = kmeans.predict(xUnSupPca)
print (n_cluster, silhouette_score(xUnSupPca,labels))
2 0.8915983178619936 3 0.8511418172013867 4 0.773740893312108 5 0.7753349739677587 6 0.7685543694478061
Optimal number of clusters is 2
Meanshift¶
In [130]:
from sklearn.cluster import MeanShift
ms = MeanShift()
In [131]:
ms.fit(xUnSupPca)
labels = ms.labels_
cluster_centers = ms.cluster_centers_
labels_unique = np.unique(labels)
n_clusters_ = len(labels_unique)
print("number of estimated clusters : %d" % n_clusters_)
number of estimated clusters : 39
In [132]:
import matplotlib.pyplot as plt
from itertools import cycle
plt.figure(1)
plt.clf()
colors = cycle('bgrcmykbgrcmykbgrcmykbgrcmyk')
for k, col in zip(range(n_clusters_), colors):
my_members = labels == k
cluster_center = cluster_centers[k]
plt.plot(cluster_center[0], cluster_center[1], 'o', markerfacecolor=col,
markeredgecolor='k', markersize=14)
plt.title('Estimated number of clusters: %d' % n_clusters_)
plt.show()
In [136]:
plt.scatter(xUnSupPca.iloc[:,0], xUnSupPca.iloc[:,1],c=ms.predict(xUnSupPca), s=20)
fig=plt.figure()
ax = fig.add_subplot(111, projection = '3d')
ax.scatter(xs = xUnSupPca.iloc[:,0] , ys =xUnSupPca.iloc[:,1], zs = xUnSupPca.iloc[:,2], c=ms.predict(xUnSupPca), s=10)
Out[136]:
<mpl_toolkits.mplot3d.art3d.Path3DCollection at 0x7f1f3e07fa50>
Supervised models¶
Decision Tree Regressor¶
In [140]:
from sklearn.tree import DecisionTreeRegressor
from sklearn.model_selection import train_test_split
from sklearn.model_selection import cross_val_score
topTenFeatures = []
for i in indices:
topTenFeatures.append(features[i])
topX = X[topTenFeatures]
regressor = DecisionTreeRegressor(max_depth=5)
X_train, X_test, y_train, y_test = train_test_split(topX, y, test_size=0.2)
regressor.fit(X_train,y_train)
y_pred = regressor.predict(X_test)
score = regressor.score(X_test, y_test)
print(score)
0.2931098323424599
In [141]:
# Mean Absolute Error
from sklearn import metrics
from sklearn.metrics import r2_score
print("Mean Absolute Error:", metrics.mean_absolute_error(y_test, y_pred))
# Mean Squared Error
print("Mean Squared Error:", metrics.mean_squared_error(y_test, y_pred))
# Root Mean Squared Error (RMSE)
print("Root Mean Squared Error:", np.sqrt(metrics.mean_squared_error(y_test, y_pred)))
# Root Squared Score (R2)
print("R Squared Score is:", r2_score(y_test, y_pred))
Mean Absolute Error: 8886342.498755282 Mean Squared Error: 126274787493387.06 Root Mean Squared Error: 11237205.50196476 R Squared Score is: 0.2931098323424599
Linear Regression¶
In [142]:
from sklearn.linear_model import LinearRegression
regressor = LinearRegression()
regressor.fit(X_train, y_train)
Out[142]:
LinearRegression()
In [143]:
cols = X_train.columns.to_list()
coeff_df = pd.DataFrame(regressor.coef_, cols, columns=['Coefficient'])
coeff_df
Out[143]:
| Coefficient | |
|---|---|
| sensor_2_sem | -2.284538e+08 |
| sensor_1_LQ | -7.791651e+07 |
| sensor_6_LQ | 6.412174e+07 |
| sensor_6_kurt | -1.677353e+06 |
| sensor_2_kurt | 5.977942e+06 |
| sensor_2_LQ | -1.574308e+08 |
| sensor_6_HQ | 5.964651e+07 |
| sensor_3_LQ | 5.139688e+07 |
| sensor_5_sem | -1.237290e+08 |
| sensor_5_var | 1.156170e+08 |
In [144]:
y_pred = regressor.predict(X_test)
In [145]:
df = pd.DataFrame({'Actual': y_test, 'Predicted': y_pred})
df.head()
Out[145]:
| Actual | Predicted | |
|---|---|---|
| 111 | 14812529.0 | 2.287721e+07 |
| 36 | 1993608.0 | 8.128342e+05 |
| 4190 | 32470387.0 | 2.454061e+07 |
| 4334 | 33030495.0 | 2.526158e+07 |
| 823 | 28038265.0 | 2.388724e+07 |
In [146]:
df.head().plot(kind='bar',figsize=(10,8))
plt.grid(which='major', linestyle='-', linewidth='0.5', color='green')
plt.grid(which='minor', linestyle=':', linewidth='0.5', color='black')
plt.show()
In [147]:
from sklearn import metrics
print('Mean Absolute Error:', metrics.mean_absolute_error(y_test, y_pred))
print('Mean Squared Error:', metrics.mean_squared_error(y_test, y_pred))
print('Root Mean Squared Error:', np.sqrt(metrics.mean_squared_error(y_test, y_pred)))
print('R-squared Error:', metrics.r2_score(y_test, y_pred))
print('Score:', regressor.score(X_test, y_test))
Mean Absolute Error: 10724258.713751307 Mean Squared Error: 156249249850603.0 Root Mean Squared Error: 12499969.993988106 R-squared Error: 0.12531186457912757 Score: 0.12531186457912757
PCA¶
In [148]:
from sklearn.decomposition import PCA
pca = PCA()
x_pca = pca.fit_transform(topX)
x_pca = pd.DataFrame(x_pca)
x_pca.head()
Out[148]:
| 0 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | |
|---|---|---|---|---|---|---|---|---|---|---|
| 0 | -0.031542 | -0.023103 | 0.006595 | -0.011663 | -0.003207 | 0.001044 | 0.002243 | 0.006618 | 0.001997 | -7.295990e-04 |
| 1 | -0.034134 | -0.029238 | -0.009815 | 0.010694 | -0.001510 | -0.006769 | -0.001812 | -0.002260 | -0.001704 | -1.345030e-03 |
| 2 | -0.035442 | -0.020390 | -0.012954 | -0.010917 | -0.003315 | -0.000796 | 0.002103 | 0.006323 | 0.003271 | -8.228136e-04 |
| 3 | -0.054880 | -0.029549 | -0.005086 | 0.007619 | -0.002307 | -0.005392 | 0.000304 | -0.000039 | -0.001183 | 3.629444e-07 |
| 4 | -0.067718 | -0.030401 | 0.021013 | 0.015441 | -0.004377 | -0.008132 | 0.000391 | -0.001682 | -0.002306 | -1.384229e-07 |
In [149]:
explained_variance = pca.explained_variance_ratio_
explained_variance
Out[149]:
array([6.94113963e-01, 1.26522012e-01, 1.00452103e-01, 3.68245487e-02,
2.20212982e-02, 1.50800722e-02, 2.83417856e-03, 1.32273207e-03,
6.59745923e-04, 1.69347018e-04])
In [150]:
np.cumsum(pca.explained_variance_ratio_)
Out[150]:
array([0.69411396, 0.82063597, 0.92108808, 0.95791263, 0.97993392,
0.995014 , 0.99784817, 0.99917091, 0.99983065, 1. ])
In [151]:
plt.plot( np.cumsum(pca.explained_variance_ratio_))
plt.xlabel('number of components')
plt.ylabel('cumulative explained variance');
In [152]:
topXP = topX # top 10 features
regressor = DecisionTreeRegressor(max_depth=5)
X_train, X_test, y_train, y_test = train_test_split(topXP, y, test_size=0.2)
regressor.fit(X_train,y_train)
y_pred = regressor.predict(X_test)
score = regressor.score(X_test, y_test)
print("Num of PCA components, score")
print("0, ",score)
for j in range(0,10):
x_pca1 = x_pca[j]
topXP = pd.concat([topXP, x_pca1], axis = 1)
X_train, X_test, y_train, y_test = train_test_split(topXP, y, test_size=0.2,random_state=0)
regressor.fit(X_train,y_train)
y_pred = regressor.predict(X_test)
score = regressor.score(X_test, y_test)
print(j+1,", ",score)
Num of PCA components, score 0, 0.36818863093347487 1 , 0.34449375240628377 2 , 0.34186520563146816 3 , 0.3368146285072192 4 , 0.34321709130062206 5 , 0.34324408685326124 6 , 0.3407830842955576 7 , 0.3407830842955576 8 , 0.35148575738238064 9 , 0.34286621626115 10 , 0.34500060279304756
In [153]:
from sklearn.svm import SVR
# Normalize the dataset
x = df_num.values
min_max_scaler = preprocessing.MinMaxScaler()
x_scaled = min_max_scaler.fit_transform(x)
df = pd.DataFrame(x_scaled, columns=df_num.columns)
X = df.drop(columns='time_to_eruption')
y = df['time_to_eruption']
y.head()
topX = X[topTenFeatures]
X_train, X_test, y_train, y_test = train_test_split(topX, y, test_size=0.2)
svrs = [SVR(kernel='linear', gamma='scale'), SVR(kernel='poly', gamma='scale'), SVR(kernel='rbf', gamma='scale')]
for model in svrs:
model.fit(X_train,y_train)
lw = 2
plt.figure(figsize=[15,8])
plt.scatter(X_train.iloc[:,0], y_train,s=10)
plt.plot(X_test.iloc[:,0], svrs[0].predict(X_test), color='green', lw=lw, label='linear model')
plt.plot(X_test.iloc[:,0], svrs[1].predict(X_test), color='red', lw=lw, label='poly model')
plt.plot(X_test.iloc[:,0], svrs[2].predict(X_test), color='navy', lw=lw, label='rbf model')
plt.legend()
Out[153]:
<matplotlib.legend.Legend at 0x7f1f7c03de50>
In [154]:
print('Score (Linear):', svrs[0].score(X_test, y_test))
print('Score (Poly):', svrs[1].score(X_test, y_test))
print('Score (RBF):', svrs[2].score(X_test, y_test))
Score (Linear): 0.09508506476188305 Score (Poly): 0.17456482256428196 Score (RBF): 0.16814845772922715
In [155]:
import tensorflow as tf
from tensorflow import keras
from tensorflow.keras import layers
from tensorflow.keras.layers.experimental import preprocessing
print(tf.__version__)
2.3.1
In [156]:
df_num.head()
Out[156]:
| segment_id | time_to_eruption | sensor_1_max | sensor_1_min | sensor_1_sum | sensor_1_mean | sensor_1_std | sensor_1_var | sensor_1_sem | sensor_1_skew | ... | sensor_10_min | sensor_10_sum | sensor_10_mean | sensor_10_std | sensor_10_var | sensor_10_sem | sensor_10_skew | sensor_10_kurt | sensor_10_HQ | sensor_10_LQ | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | 1.136038e+09 | 12262005.0 | 1353.0 | -1421.0 | -96621.0 | -1.610323 | 303.096099 | 91867.245099 | 1.237374 | -0.057494 | ... | -3527.0 | 155969.0 | 2.599440 | 596.865818 | 356248.804616 | 2.436674 | -0.048443 | 0.102101 | 992.0 | -966.0 |
| 1 | 1.969648e+09 | 32739612.0 | 2197.0 | -2005.0 | 85569.0 | 1.426126 | 438.360560 | 192159.980413 | 1.789585 | -0.001189 | ... | -4591.0 | 1193751.0 | 19.895518 | 932.699662 | 869928.658933 | 3.807699 | 0.202520 | 1.607990 | 1549.0 | -1448.0 |
| 2 | 1.895880e+09 | 14965999.0 | 1148.0 | -1115.0 | 150278.0 | 2.504592 | 241.575415 | 58358.681050 | 0.986219 | 0.071632 | ... | -2798.0 | 58087.0 | 0.968101 | 500.544892 | 250545.188582 | 2.043449 | 0.007192 | 0.615849 | 822.0 | -806.0 |
| 3 | 2.068207e+09 | 26469720.0 | 1254.0 | -1025.0 | 129950.0 | 2.165797 | 221.967825 | 49269.715377 | 0.906172 | 0.123639 | ... | -2911.0 | 502895.0 | 8.381444 | 523.449843 | 273999.738548 | 2.136957 | 0.229183 | 1.409321 | 869.0 | -828.0 |
| 4 | 1.929556e+08 | 31072429.0 | 1114.0 | -1190.0 | 4429.0 | 0.073815 | 261.695935 | 68484.762635 | 1.068360 | 0.006594 | ... | -2611.0 | -224432.0 | -3.740471 | 562.748316 | 316685.667577 | 2.297391 | -0.014160 | 0.483804 | 915.0 | -934.0 |
5 rows × 112 columns
In [157]:
train_dataset = df_num.sample(frac=0.8, random_state=0)
test_dataset = df_num.drop(train_dataset.index)
In [158]:
train_dataset.describe().transpose()
Out[158]:
| count | mean | std | min | 25% | 50% | 75% | max | |
|---|---|---|---|---|---|---|---|---|
| segment_id | 3545.0 | 1.067818e+09 | 6.166996e+08 | 6.033140e+05 | 5.465238e+08 | 1.058582e+09 | 1.604030e+09 | 2.146939e+09 |
| time_to_eruption | 3545.0 | 2.289469e+07 | 1.351329e+07 | 6.250000e+03 | 1.139943e+07 | 2.253224e+07 | 3.431179e+07 | 4.904609e+07 |
| sensor_1_max | 3545.0 | 3.193992e+03 | 4.940702e+03 | 0.000000e+00 | 1.401000e+03 | 1.981000e+03 | 2.806000e+03 | 3.276700e+04 |
| sensor_1_min | 3545.0 | -3.161543e+03 | 4.907222e+03 | -3.276700e+04 | -2.755000e+03 | -1.975000e+03 | -1.391000e+03 | 0.000000e+00 |
| sensor_1_sum | 3545.0 | -3.617642e+04 | 1.148510e+06 | -3.572893e+07 | -1.053650e+05 | 4.930000e+02 | 1.103480e+05 | 2.047363e+07 |
| ... | ... | ... | ... | ... | ... | ... | ... | ... |
| sensor_10_sem | 3545.0 | 4.332948e+00 | 7.622793e+00 | 0.000000e+00 | 2.368321e+00 | 2.936300e+00 | 3.961540e+00 | 9.571428e+01 |
| sensor_10_skew | 3545.0 | -1.341931e-03 | 1.221990e-01 | -1.525618e+00 | -3.619051e-02 | -1.805141e-03 | 3.224942e-02 | 1.775161e+00 |
| sensor_10_kurt | 3545.0 | 2.608338e+00 | 8.188934e+00 | -1.402664e+00 | 3.078441e-01 | 8.076863e-01 | 2.419824e+00 | 2.343375e+02 |
| sensor_10_HQ | 3545.0 | 1.700538e+03 | 3.093029e+03 | 0.000000e+00 | 9.050000e+02 | 1.147000e+03 | 1.571000e+03 | 3.276700e+04 |
| sensor_10_LQ | 3545.0 | -1.711472e+03 | 3.156652e+03 | -3.276700e+04 | -1.560000e+03 | -1.147000e+03 | -9.070000e+02 | 0.000000e+00 |
112 rows × 8 columns
In [159]:
train_features = train_dataset.copy()
test_features = test_dataset.copy()
In [160]:
train_labels = train_features.pop('time_to_eruption')
test_labels = test_features.pop('time_to_eruption')
In [161]:
train_dataset.describe().transpose()[['mean', 'std']]
Out[161]:
| mean | std | |
|---|---|---|
| segment_id | 1.067818e+09 | 6.166996e+08 |
| time_to_eruption | 2.289469e+07 | 1.351329e+07 |
| sensor_1_max | 3.193992e+03 | 4.940702e+03 |
| sensor_1_min | -3.161543e+03 | 4.907222e+03 |
| sensor_1_sum | -3.617642e+04 | 1.148510e+06 |
| ... | ... | ... |
| sensor_10_sem | 4.332948e+00 | 7.622793e+00 |
| sensor_10_skew | -1.341931e-03 | 1.221990e-01 |
| sensor_10_kurt | 2.608338e+00 | 8.188934e+00 |
| sensor_10_HQ | 1.700538e+03 | 3.093029e+03 |
| sensor_10_LQ | -1.711472e+03 | 3.156652e+03 |
112 rows × 2 columns
The Normalization Layer¶
In [162]:
normalizer = preprocessing.Normalization()
normalizer.adapt(np.array(train_features))
In [163]:
print(normalizer.mean.numpy())
[ 1.06781818e+09 3.19399170e+03 -3.16154297e+03 -3.61764180e+04 -6.02930248e-01 6.55304504e+02 2.84817475e+06 2.67524719e+00 8.31117667e-03 2.17005968e+00 1.04942957e+03 -1.05355994e+03 7.58832715e+03 -7.51208936e+03 8.06289609e+04 1.34379351e+00 9.79038330e+02 4.30741000e+06 3.99687409e+00 2.15183236e-02 1.06115704e+01 1.51476160e+03 -1.51485059e+03 2.63761670e+03 -2.63617383e+03 -5.42653711e+04 -9.04407799e-01 5.90266052e+02 2.51006625e+06 2.40973115e+00 -3.70999624e-04 1.61093819e+00 9.46999634e+02 -9.53432129e+02 3.23075000e+03 -3.23620728e+03 -7.34075098e+03 -1.22343816e-01 6.50667297e+02 2.47978500e+06 2.65631580e+00 -4.43356519e-04 2.51080012e+00 1.04527197e+03 -1.04810046e+03 1.81849585e+03 -1.83725525e+03 3.00962062e+05 5.01595068e+00 2.58272369e+02 4.46099250e+05 1.05438375e+00 -2.89782342e-02 8.15026855e+00 4.10608459e+02 -3.88775024e+02 3.81113843e+03 -3.80622900e+03 -1.28891631e+04 -2.14815810e-01 8.26338989e+02 2.27148875e+06 3.37348652e+00 -1.11637462e-03 1.51290786e+00 1.33526038e+03 -1.33511230e+03 3.21445728e+03 -3.18369385e+03 -9.26609473e+03 -1.54432341e-01 5.31919678e+02 9.88181312e+05 2.17153502e+00 -1.66176856e-02 8.97903728e+00 8.43879272e+02 -8.44152344e+02 3.41312280e+03 -3.35464966e+03 -1.64895581e+03 -2.74821389e-02 5.52378296e+02 9.28328438e+05 2.25505614e+00 1.18105179e-02 4.00855589e+00 8.87954590e+02 -8.87875610e+02 3.12027222e+03 -3.12701440e+03 -1.54434521e+04 -2.57386595e-01 6.58656311e+02 3.08312450e+06 2.68893075e+00 -4.85467073e-03 2.32931042e+00 1.06419324e+03 -1.06859302e+03 5.23321143e+03 -5.24319385e+03 -6.27401133e+04 -1.04565120e+00 1.06136011e+03 4.61197800e+06 4.33294821e+00 -1.34193129e-03 2.60833812e+00 1.70053809e+03 -1.71147192e+03]
In [164]:
linear_model = tf.keras.Sequential([
normalizer,
layers.Dense(units=1)
])
In [165]:
linear_model.predict(train_features[:10])
Out[165]:
array([[-0.25166342],
[-0.08427025],
[-1.1977084 ],
[ 1.1976845 ],
[-0.2533657 ],
[-0.37503454],
[-0.37118822],
[-0.43410552],
[ 2.310919 ],
[ 0.8730219 ]], dtype=float32)
In [166]:
train_features
Out[166]:
| segment_id | sensor_1_max | sensor_1_min | sensor_1_sum | sensor_1_mean | sensor_1_std | sensor_1_var | sensor_1_sem | sensor_1_skew | sensor_1_kurt | ... | sensor_10_min | sensor_10_sum | sensor_10_mean | sensor_10_std | sensor_10_var | sensor_10_sem | sensor_10_skew | sensor_10_kurt | sensor_10_HQ | sensor_10_LQ | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1696 | 9.512903e+08 | 1535.0 | -1441.0 | 54015.0 | 0.900235 | 343.352362 | 117890.844613 | 1.401718 | 0.040967 | 0.368099 | ... | -4386.0 | 317352.0 | 5.289112 | 730.756722 | 5.340054e+05 | 2.983277 | -0.026692 | 0.760005 | 1204.0 | -1171.0 |
| 582 | 5.087583e+08 | 2127.0 | -2074.0 | 134758.0 | 2.245929 | 377.628112 | 142602.990984 | 1.541647 | 0.043332 | 1.123762 | ... | -5582.0 | 338855.0 | 5.647489 | 777.130442 | 6.039317e+05 | 3.172595 | 0.000701 | 1.897151 | 1252.0 | -1219.0 |
| 4137 | 1.566132e+09 | 1349.0 | -1144.0 | -31654.0 | -0.527558 | 233.388625 | 54470.250445 | 0.952797 | 0.026034 | 0.985767 | ... | -3588.0 | 143437.0 | 2.390577 | 531.063300 | 2.820282e+05 | 2.168039 | 0.219128 | 2.735434 | 833.0 | -838.0 |
| 2805 | 1.891418e+09 | 1113.0 | -1065.0 | -57928.0 | -0.965451 | 207.070515 | 42878.198190 | 0.845355 | -0.013478 | 0.983167 | ... | -2312.0 | 707334.0 | 11.788704 | 456.127120 | 2.080519e+05 | 1.862116 | 0.119293 | 1.218446 | 769.0 | -703.0 |
| 2350 | 1.968344e+09 | 2303.0 | -2293.0 | 136687.0 | 2.278079 | 557.030462 | 310282.935621 | 2.274048 | 0.017286 | 0.060584 | ... | -5145.0 | -33833.0 | -0.563874 | 1052.295356 | 1.107326e+06 | 4.295942 | -0.026594 | 0.183967 | 1722.0 | -1723.0 |
| ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... |
| 2458 | 6.799999e+08 | 2263.0 | -2400.0 | 3923.0 | 0.065382 | 635.695603 | 404108.899408 | 2.595195 | 0.005293 | 0.017738 | ... | -4411.0 | 63131.0 | 1.052166 | 1155.120652 | 1.334304e+06 | 4.715721 | 0.030813 | -0.185746 | 1895.0 | -1892.0 |
| 2495 | 4.769483e+08 | 2207.0 | -1778.0 | 108491.0 | 1.808153 | 311.155723 | 96817.883911 | 1.270277 | 0.058023 | 1.954433 | ... | -2709.0 | 665972.0 | 11.099348 | 620.425090 | 3.849273e+05 | 2.532854 | 0.086414 | 0.686279 | 1048.0 | -991.0 |
| 1391 | 1.757782e+09 | 2883.0 | -2534.0 | -117892.0 | -1.964834 | 348.685302 | 121581.439630 | 1.423490 | 0.041614 | 3.847183 | ... | -7338.0 | 11248.0 | 0.187464 | 690.404576 | 4.766585e+05 | 2.818541 | -0.106501 | 7.103761 | 1047.0 | -1034.0 |
| 4204 | 1.145498e+09 | 2153.0 | -2030.0 | 11002.0 | 0.183364 | 258.739085 | 66945.913977 | 1.056289 | -0.057734 | 3.782980 | ... | -6419.0 | -348956.0 | -5.815836 | 576.137096 | 3.319340e+05 | 2.352050 | -0.118270 | 4.425976 | 870.0 | -926.0 |
| 1408 | 1.619054e+09 | 711.0 | -991.0 | -32399.0 | -0.539974 | 118.081887 | 13943.332073 | 0.482063 | -0.112383 | 2.083988 | ... | -2489.0 | 26441.0 | 0.440676 | 268.965642 | 7.234252e+04 | 1.098038 | -0.001512 | 6.158577 | 404.0 | -404.0 |
3545 rows × 111 columns
In [167]:
linear_model.layers[1].kernel
Out[167]:
<tf.Variable 'dense/kernel:0' shape=(111, 1) dtype=float32, numpy=
array([[-0.20445931],
[ 0.00387716],
[ 0.06813422],
[ 0.03560373],
[-0.16757046],
[-0.0724016 ],
[-0.08230014],
[ 0.03180528],
[-0.1304959 ],
[ 0.0762648 ],
[-0.17887793],
[ 0.04610461],
[ 0.13752222],
[-0.13315922],
[-0.09965238],
[ 0.06796306],
[ 0.07156464],
[-0.15845005],
[-0.06294569],
[-0.21989973],
[-0.2081897 ],
[ 0.20956773],
[ 0.22249272],
[ 0.10028148],
[-0.01752463],
[-0.11817737],
[-0.15324429],
[-0.05071715],
[ 0.15038404],
[-0.19821621],
[ 0.04734144],
[ 0.15357164],
[ 0.06946668],
[-0.01747668],
[ 0.13050297],
[ 0.0425421 ],
[ 0.21974432],
[-0.21549544],
[-0.14653021],
[ 0.07964203],
[-0.19736336],
[ 0.17418167],
[ 0.08829066],
[ 0.10826665],
[ 0.03649104],
[ 0.2304923 ],
[ 0.13421172],
[ 0.149053 ],
[-0.09417081],
[-0.13024549],
[-0.11956269],
[ 0.17865106],
[-0.12965459],
[-0.19403487],
[-0.07710211],
[-0.04690868],
[-0.0552036 ],
[ 0.08878934],
[ 0.09359154],
[-0.15008704],
[ 0.04190302],
[ 0.05526739],
[ 0.19608587],
[ 0.21106213],
[ 0.04189578],
[-0.14122485],
[ 0.06773812],
[ 0.14648706],
[ 0.19763619],
[-0.14959574],
[-0.04744992],
[ 0.11362961],
[-0.04237798],
[ 0.07432595],
[-0.19758993],
[ 0.01031269],
[ 0.15906706],
[-0.10377334],
[ 0.17738819],
[-0.07073468],
[ 0.0210408 ],
[-0.02794024],
[-0.22552432],
[ 0.04928079],
[ 0.0217824 ],
[ 0.19420803],
[-0.12182459],
[ 0.20548815],
[ 0.1451939 ],
[-0.07080327],
[-0.1369636 ],
[-0.01370032],
[-0.17897014],
[ 0.05707437],
[-0.19961964],
[ 0.17488945],
[-0.01985347],
[ 0.22665101],
[-0.08358133],
[-0.11996359],
[-0.05502607],
[-0.21301004],
[ 0.0792335 ],
[-0.19461799],
[ 0.18110049],
[-0.03975596],
[ 0.02777165],
[-0.16090074],
[-0.19730051],
[ 0.05016968],
[ 0.14617395]], dtype=float32)>
In [168]:
linear_model.compile(
optimizer=tf.optimizers.Adam(learning_rate=0.1),
loss='mean_absolute_error')
In [169]:
%%time
history = linear_model.fit(
train_features, train_labels,
epochs=100,
# suppress logging
verbose=0,
# Calculate validation results on 20% of the training data
validation_split = 0.2)
CPU times: user 15.9 s, sys: 2.64 s, total: 18.5 s Wall time: 12.3 s
In [170]:
hist = pd.DataFrame(history.history)
hist['epoch'] = history.epoch
hist.tail()
Out[170]:
| loss | val_loss | epoch | |
|---|---|---|---|
| 95 | 22719558.0 | 23590936.0 | 95 |
| 96 | 22719550.0 | 23590928.0 | 96 |
| 97 | 22719542.0 | 23590920.0 | 97 |
| 98 | 22719532.0 | 23590910.0 | 98 |
| 99 | 22719520.0 | 23590904.0 | 99 |
In [172]:
def plot_loss(history):
plt.plot(history.history['loss'], label='loss')
plt.plot(history.history['val_loss'], label='val_loss')
plt.ylim(2.0e7, 2.5e7)
plt.xlabel('Epoch')
plt.ylabel('Error [MPG]')
plt.legend()
plt.grid(True)
In [173]:
plot_loss(history)
In [174]:
test_results = {}
test_results['linear_model'] = linear_model.evaluate(
test_features, test_labels, verbose=0)
In [175]:
test_results
Out[175]:
{'linear_model': 22664866.0}
In [176]:
def build_and_compile_model(norm):
model = keras.Sequential([
norm,
layers.Dense(64, activation='relu'),
layers.Dense(64, activation='relu'),
layers.Dense(1)
])
model.compile(loss='mean_absolute_error',
optimizer=tf.keras.optimizers.Adam(0.001))
return model
In [177]:
dnn_model = build_and_compile_model(normalizer)
dnn_model.summary()
Model: "sequential_1" _________________________________________________________________ Layer (type) Output Shape Param # ================================================================= normalization (Normalization (None, 111) 223 _________________________________________________________________ dense_1 (Dense) (None, 64) 7168 _________________________________________________________________ dense_2 (Dense) (None, 64) 4160 _________________________________________________________________ dense_3 (Dense) (None, 1) 65 ================================================================= Total params: 11,616 Trainable params: 11,393 Non-trainable params: 223 _________________________________________________________________
In [178]:
%%time
history = dnn_model.fit(
train_features, train_labels,
validation_split=0.2,
verbose=0, epochs=100)
CPU times: user 20 s, sys: 3.04 s, total: 23 s Wall time: 13.9 s
In [179]:
plot_loss(history)
In [180]:
test_results['dnn_model'] = dnn_model.evaluate(test_features, test_labels, verbose=0)
In [181]:
test_results
Out[181]:
{'linear_model': 22664866.0, 'dnn_model': 11937369.0}
In [182]:
pd.DataFrame(test_results, index=['Mean absolute error']).T
Out[182]:
| Mean absolute error | |
|---|---|
| linear_model | 22664866.0 |
| dnn_model | 11937369.0 |
In [183]:
test_predictions = dnn_model.predict(test_features).flatten()
a = plt.axes(aspect='equal')
plt.scatter(test_labels, test_predictions)
plt.xlabel('True Values')
plt.ylabel('Predictions')
lims = [0, 8.0e7]
plt.xlim(lims)
plt.ylim(lims)
_ = plt.plot(lims, lims)
In [185]:
error = test_predictions - test_labels
plt.hist(error, bins=25)
plt.xlabel('Prediction Error')
_ = plt.ylabel('Count')
XGBoost¶
In [192]:
import xgboost as xg
from sklearn.metrics import mean_squared_error as MSE
In [217]:
X_train, X_test, y_train, y_test = train_test_split(topXP, y, test_size=0.2)
dtrain = xg.DMatrix(data = X_train, label = y_train)
dtest = xg.DMatrix(data = X_test, label = y_test)
xgb_r = xg.XGBRegressor(objective ='reg:squarederror', colsample_bytree = 0.3, learning_rate = 0.1,
max_depth = 5, alpha = 10, n_estimators = 10)
xgb_r.fit(X_train,y_train)
pred = xgb_r.predict(X_test)
# RMSE Computation
rmse = np.sqrt(MSE(y_test, pred))
print("RMSE : % f" %(rmse))
RMSE : 0.233743
In [213]:
xg.plot_importance(xgb_r)
plt.rcParams['figure.figsize'] = [5, 5]
plt.show()
In [216]:
eval_set = [(X_train, y_train), (X_test, y_test)]
eval_metric = ["auc","error"]
%time xgb_r.fit(X_train, y_train, eval_metric=eval_metric, eval_set=eval_set, verbose=True)
[0] validation_0-auc:0.66040 validation_0-error:0.37967 validation_1-auc:0.64844 validation_1-error:0.39520 [1] validation_0-auc:0.68490 validation_0-error:0.36910 validation_1-auc:0.67415 validation_1-error:0.38651 [2] validation_0-auc:0.68937 validation_0-error:0.37009 validation_1-auc:0.67597 validation_1-error:0.39121 [3] validation_0-auc:0.69543 validation_0-error:0.37035 validation_1-auc:0.67967 validation_1-error:0.39114 [4] validation_0-auc:0.70443 validation_0-error:0.36300 validation_1-auc:0.68895 validation_1-error:0.37801 [5] validation_0-auc:0.70310 validation_0-error:0.36539 validation_1-auc:0.68797 validation_1-error:0.38116 [6] validation_0-auc:0.70580 validation_0-error:0.36035 validation_1-auc:0.68884 validation_1-error:0.37374 [7] validation_0-auc:0.70672 validation_0-error:0.35665 validation_1-auc:0.69113 validation_1-error:0.37049 [8] validation_0-auc:0.71020 validation_0-error:0.35329 validation_1-auc:0.69492 validation_1-error:0.36602 [9] validation_0-auc:0.71148 validation_0-error:0.35203 validation_1-auc:0.69471 validation_1-error:0.36582 CPU times: user 287 ms, sys: 15 ms, total: 302 ms Wall time: 107 ms
Out[216]:
XGBRegressor(alpha=10, base_score=0.5, booster='gbtree', colsample_bylevel=1,
colsample_bynode=1, colsample_bytree=0.3, gamma=0, gpu_id=-1,
importance_type='gain', interaction_constraints='',
learning_rate=0.1, max_delta_step=0, max_depth=5,
min_child_weight=1, missing=nan, monotone_constraints='()',
n_estimators=10, n_jobs=0, num_parallel_tree=1, random_state=0,
reg_alpha=10, reg_lambda=1, scale_pos_weight=1, subsample=1,
tree_method='exact', validate_parameters=1, verbosity=None)
Source: https://blog.cambridgespark.com/hyperparameter-tuning-in-xgboost-4ff9100a3b2f****
This source was used to learn how to increase the accuracy of the XGboost model shown below.
In [220]:
params = {
# Parameters that we are going to tune.
'max_depth':6,
'min_child_weight': 1,
'eta':.3,
'subsample': 1,
'colsample_bytree': 1,
# Other parameters
'objective':'reg:linear',
}
params['eval_metric'] = "mae"
num_boost_round = 999
model = xg.train(
params,
dtrain,
num_boost_round=num_boost_round,
evals=[(dtest, "Test")],
early_stopping_rounds=10
)
print("Best MAE: {:.2f} with {} rounds".format(
model.best_score,
model.best_iteration+1))
[04:45:52] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [0] Test-mae:0.20706 Will train until Test-mae hasn't improved in 10 rounds. [1] Test-mae:0.18475 [2] Test-mae:0.17108 [3] Test-mae:0.15857 [4] Test-mae:0.14977 [5] Test-mae:0.14206 [6] Test-mae:0.13601 [7] Test-mae:0.13302 [8] Test-mae:0.13128 [9] Test-mae:0.12862 [10] Test-mae:0.12624 [11] Test-mae:0.12476 [12] Test-mae:0.12270 [13] Test-mae:0.12265 [14] Test-mae:0.12191 [15] Test-mae:0.12139 [16] Test-mae:0.12096 [17] Test-mae:0.12055 [18] Test-mae:0.12050 [19] Test-mae:0.11976 [20] Test-mae:0.11951 [21] Test-mae:0.11876 [22] Test-mae:0.11868 [23] Test-mae:0.11804 [24] Test-mae:0.11815 [25] Test-mae:0.11812 [26] Test-mae:0.11779 [27] Test-mae:0.11733 [28] Test-mae:0.11681 [29] Test-mae:0.11693 [30] Test-mae:0.11682 [31] Test-mae:0.11625 [32] Test-mae:0.11626 [33] Test-mae:0.11616 [34] Test-mae:0.11634 [35] Test-mae:0.11642 [36] Test-mae:0.11601 [37] Test-mae:0.11555 [38] Test-mae:0.11547 [39] Test-mae:0.11547 [40] Test-mae:0.11550 [41] Test-mae:0.11530 [42] Test-mae:0.11463 [43] Test-mae:0.11415 [44] Test-mae:0.11428 [45] Test-mae:0.11370 [46] Test-mae:0.11372 [47] Test-mae:0.11356 [48] Test-mae:0.11356 [49] Test-mae:0.11356 [50] Test-mae:0.11354 [51] Test-mae:0.11346 [52] Test-mae:0.11355 [53] Test-mae:0.11328 [54] Test-mae:0.11331 [55] Test-mae:0.11353 [56] Test-mae:0.11329 [57] Test-mae:0.11332 [58] Test-mae:0.11332 [59] Test-mae:0.11341 [60] Test-mae:0.11339 [61] Test-mae:0.11331 [62] Test-mae:0.11324 [63] Test-mae:0.11315 [64] Test-mae:0.11339 [65] Test-mae:0.11333 [66] Test-mae:0.11345 [67] Test-mae:0.11350 [68] Test-mae:0.11332 [69] Test-mae:0.11327 [70] Test-mae:0.11335 [71] Test-mae:0.11333 [72] Test-mae:0.11345 [73] Test-mae:0.11342 Stopping. Best iteration: [63] Test-mae:0.11315 [04:45:53] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. Best MAE: 0.11 with 64 rounds
In [224]:
cv_results = xg.cv(
params,
dtrain,
num_boost_round=num_boost_round,
seed=42,
nfold=5,
metrics={'mae'},
early_stopping_rounds=10
)
cv_results
cv_results['test-mae-mean'].min()
[04:47:07] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:47:07] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:47:07] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:47:07] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:47:07] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror.
Out[224]:
0.1195538
In [227]:
gridsearch_params = [
(max_depth, min_child_weight)
for max_depth in range(9,12)
for min_child_weight in range(5,8)
]
# Define initial best params and MAE
min_mae = float("Inf")
best_params = None
for max_depth, min_child_weight in gridsearch_params:
print("CV with max_depth={}, min_child_weight={}".format(
max_depth,
min_child_weight))
# Update our parameters
params['max_depth'] = max_depth
params['min_child_weight'] = min_child_weight
# Run CV
cv_results = xg.cv(
params,
dtrain,
num_boost_round=num_boost_round,
seed=42,
nfold=5,
metrics={'mae'},
early_stopping_rounds=10
)
# Update best MAE
mean_mae = cv_results['test-mae-mean'].min()
boost_rounds = cv_results['test-mae-mean'].argmin()
print("\tMAE {} for {} rounds".format(mean_mae, boost_rounds))
if mean_mae < min_mae:
min_mae = mean_mae
best_params = (max_depth,min_child_weight)
print("Best params: {}, {}, MAE: {}".format(best_params[0], best_params[1], min_mae))
CV with max_depth=9, min_child_weight=5 [04:48:16] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:16] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:16] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:16] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:16] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.116652 for 41 rounds CV with max_depth=9, min_child_weight=6 [04:48:18] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:18] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:18] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:18] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:18] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.1173556 for 34 rounds CV with max_depth=9, min_child_weight=7 [04:48:19] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:19] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:19] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:19] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:19] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.11759939999999999 for 40 rounds CV with max_depth=10, min_child_weight=5 [04:48:21] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:21] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:21] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:21] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:21] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.11629640000000001 for 40 rounds CV with max_depth=10, min_child_weight=6 [04:48:23] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:23] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:23] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:23] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:23] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.11632279999999999 for 25 rounds CV with max_depth=10, min_child_weight=7 [04:48:25] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:25] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:25] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:25] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:25] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.1148636 for 48 rounds CV with max_depth=11, min_child_weight=5 [04:48:28] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:28] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:28] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:28] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:28] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.11639980000000001 for 29 rounds CV with max_depth=11, min_child_weight=6 [04:48:30] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:30] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:30] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:30] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:30] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.11547559999999998 for 40 rounds CV with max_depth=11, min_child_weight=7 [04:48:32] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:32] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:32] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:32] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:48:32] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.11636500000000001 for 64 rounds Best params: 10, 7, MAE: 0.1148636
In [230]:
params['max_depth'] = 10
params['min_child_weight'] = 7
gridsearch_params = [
(subsample, colsample)
for subsample in [i/10. for i in range(7,11)]
for colsample in [i/10. for i in range(7,11)]
]
min_mae = float("Inf")
best_params = None
# We start by the largest values and go down to the smallest
for subsample, colsample in reversed(gridsearch_params):
print("CV with subsample={}, colsample={}".format(
subsample,
colsample))
# We update our parameters
params['subsample'] = subsample
params['colsample_bytree'] = colsample
# Run CV
cv_results = xg.cv(
params,
dtrain,
num_boost_round=num_boost_round,
seed=42,
nfold=5,
metrics={'mae'},
early_stopping_rounds=10
)
# Update best score
mean_mae = cv_results['test-mae-mean'].min()
boost_rounds = cv_results['test-mae-mean'].argmin()
print("\tMAE {} for {} rounds".format(mean_mae, boost_rounds))
if mean_mae < min_mae:
min_mae = mean_mae
best_params = (subsample,colsample)
print("Best params: {}, {}, MAE: {}".format(best_params[0], best_params[1], min_mae))
CV with subsample=1.0, colsample=1.0 [04:49:39] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:39] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:39] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:39] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:39] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.1148636 for 48 rounds CV with subsample=1.0, colsample=0.9 [04:49:42] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:42] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:42] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:42] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:42] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.11580359999999998 for 68 rounds CV with subsample=1.0, colsample=0.8 [04:49:45] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:45] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:45] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:45] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:45] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.116007 for 79 rounds CV with subsample=1.0, colsample=0.7 [04:49:48] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:48] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:48] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:48] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:48] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.11665460000000001 for 63 rounds CV with subsample=0.9, colsample=1.0 [04:49:51] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:51] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:51] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:51] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:51] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.1169962 for 39 rounds CV with subsample=0.9, colsample=0.9 [04:49:53] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:53] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:53] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:53] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:53] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.1184326 for 37 rounds CV with subsample=0.9, colsample=0.8 [04:49:54] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:54] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:54] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:54] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:54] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.11782719999999999 for 35 rounds CV with subsample=0.9, colsample=0.7 [04:49:56] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:56] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:56] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:56] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:56] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.11780900000000001 for 56 rounds CV with subsample=0.8, colsample=1.0 [04:49:58] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:58] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:58] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:58] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:49:58] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.119146 for 33 rounds CV with subsample=0.8, colsample=0.9 [04:50:00] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:00] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:00] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:00] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:00] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.11788099999999999 for 40 rounds CV with subsample=0.8, colsample=0.8 [04:50:01] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:01] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:01] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:01] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:01] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.1177028 for 20 rounds CV with subsample=0.8, colsample=0.7 [04:50:02] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:02] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:02] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:02] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:02] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.1212806 for 22 rounds CV with subsample=0.7, colsample=1.0 [04:50:04] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:04] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:04] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:04] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:04] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.12078740000000002 for 17 rounds CV with subsample=0.7, colsample=0.9 [04:50:05] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:05] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:05] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:05] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:05] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.11969 for 60 rounds CV with subsample=0.7, colsample=0.8 [04:50:07] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:07] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:07] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:07] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:07] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.12035520000000002 for 17 rounds CV with subsample=0.7, colsample=0.7 [04:50:08] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:08] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:08] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:08] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:50:08] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.12323680000000001 for 17 rounds Best params: 1.0, 1.0, MAE: 0.1148636
In [231]:
params['subsample'] = 1.0
params['colsample_bytree'] = 1.0
In [250]:
%time
# This can take some time…
min_mae = float("Inf")
best_params = None
for eta in [.3, .2, .1, .05, .01, .005]:
print("CV with eta={}".format(eta))
# We update our parameters
params['eta'] = eta
# Run and time CV
cv_results = xg.cv(
params,
dtrain,
num_boost_round=num_boost_round,
seed=42,
nfold=5,
metrics=['mae'],
early_stopping_rounds=10)
# Update best score
mean_mae = cv_results['test-mae-mean'].min()
boost_rounds = cv_results['test-mae-mean'].argmin()
print("\tMAE {} for {} rounds\n".format(mean_mae, boost_rounds))
if mean_mae < min_mae:
min_mae = mean_mae
best_params = eta
print("Best params: {}, MAE: {}".format(best_params, min_mae))
CPU times: user 4 µs, sys: 1e+03 ns, total: 5 µs Wall time: 7.87 µs CV with eta=0.3 [04:53:47] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:53:47] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:53:47] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:53:47] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:53:47] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.1148636 for 48 rounds CV with eta=0.2 [04:53:49] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:53:49] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:53:49] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:53:49] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:53:49] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.1134124 for 99 rounds CV with eta=0.1 [04:53:53] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:53:53] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:53:54] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:53:54] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:53:54] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.1106506 for 258 rounds CV with eta=0.05 [04:54:04] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:54:04] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:54:04] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:54:04] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:54:04] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.1105604 for 369 rounds CV with eta=0.01 [04:54:20] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:54:20] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:54:20] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:54:20] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:54:20] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.11073060000000001 for 998 rounds CV with eta=0.005 [04:55:01] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:55:01] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:55:01] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:55:01] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [04:55:01] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. MAE 0.1127764 for 998 rounds Best params: 0.05, MAE: 0.1105604
In [251]:
params['eta'] = .01
In [253]:
model = xg.train(
params,
dtrain,
num_boost_round=num_boost_round,
evals=[(dtest, "Test")],
early_stopping_rounds=10
)
print("Best MAE: {:.2f} in {} rounds".format(model.best_score, model.best_iteration+1))
[04:57:27] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [0] Test-mae:0.23820 Will train until Test-mae hasn't improved in 10 rounds. [1] Test-mae:0.23674 [2] Test-mae:0.23530 [3] Test-mae:0.23387 [4] Test-mae:0.23247 [5] Test-mae:0.23107 [6] Test-mae:0.22970 [7] Test-mae:0.22833 [8] Test-mae:0.22696 [9] Test-mae:0.22561 [10] Test-mae:0.22431 [11] Test-mae:0.22297 [12] Test-mae:0.22169 [13] Test-mae:0.22043 [14] Test-mae:0.21918 [15] Test-mae:0.21795 [16] Test-mae:0.21672 [17] Test-mae:0.21549 [18] Test-mae:0.21429 [19] Test-mae:0.21309 [20] Test-mae:0.21191 [21] Test-mae:0.21076 [22] Test-mae:0.20961 [23] Test-mae:0.20852 [24] Test-mae:0.20741 [25] Test-mae:0.20633 [26] Test-mae:0.20525 [27] Test-mae:0.20420 [28] Test-mae:0.20312 [29] Test-mae:0.20212 [30] Test-mae:0.20108 [31] Test-mae:0.20007 [32] Test-mae:0.19908 [33] Test-mae:0.19809 [34] Test-mae:0.19714 [35] Test-mae:0.19618 [36] Test-mae:0.19526 [37] Test-mae:0.19434 [38] Test-mae:0.19344 [39] Test-mae:0.19249 [40] Test-mae:0.19156 [41] Test-mae:0.19063 [42] Test-mae:0.18969 [43] Test-mae:0.18878 [44] Test-mae:0.18787 [45] Test-mae:0.18699 [46] Test-mae:0.18611 [47] Test-mae:0.18529 [48] Test-mae:0.18441 [49] Test-mae:0.18356 [50] Test-mae:0.18275 [51] Test-mae:0.18194 [52] Test-mae:0.18115 [53] Test-mae:0.18036 [54] Test-mae:0.17958 [55] Test-mae:0.17882 [56] Test-mae:0.17804 [57] Test-mae:0.17728 [58] Test-mae:0.17653 [59] Test-mae:0.17577 [60] Test-mae:0.17503 [61] Test-mae:0.17430 [62] Test-mae:0.17356 [63] Test-mae:0.17284 [64] Test-mae:0.17215 [65] Test-mae:0.17144 [66] Test-mae:0.17076 [67] Test-mae:0.17006 [68] Test-mae:0.16935 [69] Test-mae:0.16872 [70] Test-mae:0.16806 [71] Test-mae:0.16744 [72] Test-mae:0.16679 [73] Test-mae:0.16615 [74] Test-mae:0.16551 [75] Test-mae:0.16491 [76] Test-mae:0.16429 [77] Test-mae:0.16370 [78] Test-mae:0.16311 [79] Test-mae:0.16253 [80] Test-mae:0.16196 [81] Test-mae:0.16138 [82] Test-mae:0.16080 [83] Test-mae:0.16020 [84] Test-mae:0.15960 [85] Test-mae:0.15904 [86] Test-mae:0.15845 [87] Test-mae:0.15784 [88] Test-mae:0.15729 [89] Test-mae:0.15674 [90] Test-mae:0.15618 [91] Test-mae:0.15564 [92] Test-mae:0.15512 [93] Test-mae:0.15459 [94] Test-mae:0.15415 [95] Test-mae:0.15371 [96] Test-mae:0.15327 [97] Test-mae:0.15275 [98] Test-mae:0.15233 [99] Test-mae:0.15193 [100] Test-mae:0.15145 [101] Test-mae:0.15102 [102] Test-mae:0.15057 [103] Test-mae:0.15014 [104] Test-mae:0.14967 [105] Test-mae:0.14928 [106] Test-mae:0.14889 [107] Test-mae:0.14846 [108] Test-mae:0.14807 [109] Test-mae:0.14766 [110] Test-mae:0.14722 [111] Test-mae:0.14678 [112] Test-mae:0.14635 [113] Test-mae:0.14590 [114] Test-mae:0.14546 [115] Test-mae:0.14506 [116] Test-mae:0.14464 [117] Test-mae:0.14419 [118] Test-mae:0.14380 [119] Test-mae:0.14338 [120] Test-mae:0.14299 [121] Test-mae:0.14255 [122] Test-mae:0.14219 [123] Test-mae:0.14178 [124] Test-mae:0.14137 [125] Test-mae:0.14097 [126] Test-mae:0.14058 [127] Test-mae:0.14019 [128] Test-mae:0.13986 [129] Test-mae:0.13949 [130] Test-mae:0.13913 [131] Test-mae:0.13876 [132] Test-mae:0.13843 [133] Test-mae:0.13811 [134] Test-mae:0.13780 [135] Test-mae:0.13749 [136] Test-mae:0.13719 [137] Test-mae:0.13687 [138] Test-mae:0.13656 [139] Test-mae:0.13628 [140] Test-mae:0.13596 [141] Test-mae:0.13567 [142] Test-mae:0.13537 [143] Test-mae:0.13509 [144] Test-mae:0.13481 [145] Test-mae:0.13453 [146] Test-mae:0.13422 [147] Test-mae:0.13394 [148] Test-mae:0.13364 [149] Test-mae:0.13337 [150] Test-mae:0.13308 [151] Test-mae:0.13279 [152] Test-mae:0.13249 [153] Test-mae:0.13222 [154] Test-mae:0.13196 [155] Test-mae:0.13169 [156] Test-mae:0.13141 [157] Test-mae:0.13115 [158] Test-mae:0.13088 [159] Test-mae:0.13062 [160] Test-mae:0.13036 [161] Test-mae:0.13009 [162] Test-mae:0.12983 [163] Test-mae:0.12957 [164] Test-mae:0.12931 [165] Test-mae:0.12904 [166] Test-mae:0.12877 [167] Test-mae:0.12855 [168] Test-mae:0.12829 [169] Test-mae:0.12805 [170] Test-mae:0.12784 [171] Test-mae:0.12762 [172] Test-mae:0.12743 [173] Test-mae:0.12721 [174] Test-mae:0.12700 [175] Test-mae:0.12679 [176] Test-mae:0.12660 [177] Test-mae:0.12639 [178] Test-mae:0.12612 [179] Test-mae:0.12589 [180] Test-mae:0.12563 [181] Test-mae:0.12541 [182] Test-mae:0.12515 [183] Test-mae:0.12495 [184] Test-mae:0.12472 [185] Test-mae:0.12454 [186] Test-mae:0.12430 [187] Test-mae:0.12408 [188] Test-mae:0.12387 [189] Test-mae:0.12366 [190] Test-mae:0.12344 [191] Test-mae:0.12324 [192] Test-mae:0.12304 [193] Test-mae:0.12288 [194] Test-mae:0.12268 [195] Test-mae:0.12248 [196] Test-mae:0.12232 [197] Test-mae:0.12213 [198] Test-mae:0.12195 [199] Test-mae:0.12179 [200] Test-mae:0.12162 [201] Test-mae:0.12146 [202] Test-mae:0.12129 [203] Test-mae:0.12112 [204] Test-mae:0.12096 [205] Test-mae:0.12080 [206] Test-mae:0.12064 [207] Test-mae:0.12048 [208] Test-mae:0.12032 [209] Test-mae:0.12017 [210] Test-mae:0.12004 [211] Test-mae:0.11989 [212] Test-mae:0.11975 [213] Test-mae:0.11961 [214] Test-mae:0.11946 [215] Test-mae:0.11930 [216] Test-mae:0.11918 [217] Test-mae:0.11903 [218] Test-mae:0.11888 [219] Test-mae:0.11874 [220] Test-mae:0.11863 [221] Test-mae:0.11847 [222] Test-mae:0.11836 [223] Test-mae:0.11822 [224] Test-mae:0.11808 [225] Test-mae:0.11794 [226] Test-mae:0.11780 [227] Test-mae:0.11770 [228] Test-mae:0.11757 [229] Test-mae:0.11744 [230] Test-mae:0.11731 [231] Test-mae:0.11718 [232] Test-mae:0.11707 [233] Test-mae:0.11692 [234] Test-mae:0.11677 [235] Test-mae:0.11665 [236] Test-mae:0.11652 [237] Test-mae:0.11638 [238] Test-mae:0.11626 [239] Test-mae:0.11614 [240] Test-mae:0.11605 [241] Test-mae:0.11591 [242] Test-mae:0.11579 [243] Test-mae:0.11567 [244] Test-mae:0.11557 [245] Test-mae:0.11547 [246] Test-mae:0.11537 [247] Test-mae:0.11525 [248] Test-mae:0.11514 [249] Test-mae:0.11503 [250] Test-mae:0.11495 [251] Test-mae:0.11484 [252] Test-mae:0.11472 [253] Test-mae:0.11460 [254] Test-mae:0.11447 [255] Test-mae:0.11435 [256] Test-mae:0.11426 [257] Test-mae:0.11417 [258] Test-mae:0.11406 [259] Test-mae:0.11395 [260] Test-mae:0.11384 [261] Test-mae:0.11375 [262] Test-mae:0.11367 [263] Test-mae:0.11357 [264] Test-mae:0.11345 [265] Test-mae:0.11333 [266] Test-mae:0.11321 [267] Test-mae:0.11309 [268] Test-mae:0.11298 [269] Test-mae:0.11288 [270] Test-mae:0.11279 [271] Test-mae:0.11271 [272] Test-mae:0.11263 [273] Test-mae:0.11255 [274] Test-mae:0.11248 [275] Test-mae:0.11240 [276] Test-mae:0.11234 [277] Test-mae:0.11227 [278] Test-mae:0.11220 [279] Test-mae:0.11215 [280] Test-mae:0.11209 [281] Test-mae:0.11204 [282] Test-mae:0.11193 [283] Test-mae:0.11189 [284] Test-mae:0.11181 [285] Test-mae:0.11177 [286] Test-mae:0.11174 [287] Test-mae:0.11169 [288] Test-mae:0.11158 [289] Test-mae:0.11149 [290] Test-mae:0.11142 [291] Test-mae:0.11137 [292] Test-mae:0.11132 [293] Test-mae:0.11123 [294] Test-mae:0.11112 [295] Test-mae:0.11101 [296] Test-mae:0.11093 [297] Test-mae:0.11084 [298] Test-mae:0.11074 [299] Test-mae:0.11064 [300] Test-mae:0.11054 [301] Test-mae:0.11048 [302] Test-mae:0.11041 [303] Test-mae:0.11036 [304] Test-mae:0.11031 [305] Test-mae:0.11025 [306] Test-mae:0.11020 [307] Test-mae:0.11015 [308] Test-mae:0.11009 [309] Test-mae:0.11004 [310] Test-mae:0.10998 [311] Test-mae:0.10993 [312] Test-mae:0.10988 [313] Test-mae:0.10982 [314] Test-mae:0.10977 [315] Test-mae:0.10971 [316] Test-mae:0.10967 [317] Test-mae:0.10962 [318] Test-mae:0.10956 [319] Test-mae:0.10953 [320] Test-mae:0.10947 [321] Test-mae:0.10944 [322] Test-mae:0.10939 [323] Test-mae:0.10934 [324] Test-mae:0.10930 [325] Test-mae:0.10925 [326] Test-mae:0.10921 [327] Test-mae:0.10918 [328] Test-mae:0.10914 [329] Test-mae:0.10909 [330] Test-mae:0.10905 [331] Test-mae:0.10901 [332] Test-mae:0.10897 [333] Test-mae:0.10892 [334] Test-mae:0.10888 [335] Test-mae:0.10885 [336] Test-mae:0.10882 [337] Test-mae:0.10878 [338] Test-mae:0.10875 [339] Test-mae:0.10872 [340] Test-mae:0.10871 [341] Test-mae:0.10869 [342] Test-mae:0.10865 [343] Test-mae:0.10861 [344] Test-mae:0.10859 [345] Test-mae:0.10855 [346] Test-mae:0.10852 [347] Test-mae:0.10850 [348] Test-mae:0.10846 [349] Test-mae:0.10840 [350] Test-mae:0.10834 [351] Test-mae:0.10828 [352] Test-mae:0.10822 [353] Test-mae:0.10819 [354] Test-mae:0.10812 [355] Test-mae:0.10808 [356] Test-mae:0.10804 [357] Test-mae:0.10801 [358] Test-mae:0.10797 [359] Test-mae:0.10795 [360] Test-mae:0.10792 [361] Test-mae:0.10790 [362] Test-mae:0.10788 [363] Test-mae:0.10784 [364] Test-mae:0.10779 [365] Test-mae:0.10779 [366] Test-mae:0.10776 [367] Test-mae:0.10776 [368] Test-mae:0.10772 [369] Test-mae:0.10771 [370] Test-mae:0.10769 [371] Test-mae:0.10769 [372] Test-mae:0.10766 [373] Test-mae:0.10766 [374] Test-mae:0.10765 [375] Test-mae:0.10764 [376] Test-mae:0.10762 [377] Test-mae:0.10759 [378] Test-mae:0.10756 [379] Test-mae:0.10754 [380] Test-mae:0.10749 [381] Test-mae:0.10747 [382] Test-mae:0.10744 [383] Test-mae:0.10740 [384] Test-mae:0.10738 [385] Test-mae:0.10734 [386] Test-mae:0.10731 [387] Test-mae:0.10727 [388] Test-mae:0.10724 [389] Test-mae:0.10720 [390] Test-mae:0.10717 [391] Test-mae:0.10716 [392] Test-mae:0.10714 [393] Test-mae:0.10712 [394] Test-mae:0.10709 [395] Test-mae:0.10707 [396] Test-mae:0.10705 [397] Test-mae:0.10703 [398] Test-mae:0.10700 [399] Test-mae:0.10698 [400] Test-mae:0.10696 [401] Test-mae:0.10694 [402] Test-mae:0.10691 [403] Test-mae:0.10689 [404] Test-mae:0.10687 [405] Test-mae:0.10684 [406] Test-mae:0.10681 [407] Test-mae:0.10680 [408] Test-mae:0.10677 [409] Test-mae:0.10675 [410] Test-mae:0.10672 [411] Test-mae:0.10670 [412] Test-mae:0.10669 [413] Test-mae:0.10667 [414] Test-mae:0.10665 [415] Test-mae:0.10663 [416] Test-mae:0.10661 [417] Test-mae:0.10659 [418] Test-mae:0.10658 [419] Test-mae:0.10656 [420] Test-mae:0.10653 [421] Test-mae:0.10651 [422] Test-mae:0.10649 [423] Test-mae:0.10648 [424] Test-mae:0.10645 [425] Test-mae:0.10645 [426] Test-mae:0.10642 [427] Test-mae:0.10641 [428] Test-mae:0.10641 [429] Test-mae:0.10639 [430] Test-mae:0.10635 [431] Test-mae:0.10631 [432] Test-mae:0.10631 [433] Test-mae:0.10628 [434] Test-mae:0.10627 [435] Test-mae:0.10627 [436] Test-mae:0.10626 [437] Test-mae:0.10623 [438] Test-mae:0.10622 [439] Test-mae:0.10622 [440] Test-mae:0.10621 [441] Test-mae:0.10618 [442] Test-mae:0.10617 [443] Test-mae:0.10613 [444] Test-mae:0.10611 [445] Test-mae:0.10610 [446] Test-mae:0.10609 [447] Test-mae:0.10605 [448] Test-mae:0.10603 [449] Test-mae:0.10603 [450] Test-mae:0.10598 [451] Test-mae:0.10598 [452] Test-mae:0.10595 [453] Test-mae:0.10594 [454] Test-mae:0.10594 [455] Test-mae:0.10593 [456] Test-mae:0.10592 [457] Test-mae:0.10592 [458] Test-mae:0.10591 [459] Test-mae:0.10591 [460] Test-mae:0.10591 [461] Test-mae:0.10590 [462] Test-mae:0.10588 [463] Test-mae:0.10588 [464] Test-mae:0.10588 [465] Test-mae:0.10586 [466] Test-mae:0.10586 [467] Test-mae:0.10586 [468] Test-mae:0.10585 [469] Test-mae:0.10584 [470] Test-mae:0.10583 [471] Test-mae:0.10582 [472] Test-mae:0.10582 [473] Test-mae:0.10582 [474] Test-mae:0.10581 [475] Test-mae:0.10581 [476] Test-mae:0.10581 [477] Test-mae:0.10580 [478] Test-mae:0.10580 [479] Test-mae:0.10579 [480] Test-mae:0.10578 [481] Test-mae:0.10578 [482] Test-mae:0.10578 [483] Test-mae:0.10578 [484] Test-mae:0.10577 [485] Test-mae:0.10577 [486] Test-mae:0.10575 [487] Test-mae:0.10575 [488] Test-mae:0.10574 [489] Test-mae:0.10573 [490] Test-mae:0.10573 [491] Test-mae:0.10572 [492] Test-mae:0.10572 [493] Test-mae:0.10571 [494] Test-mae:0.10571 [495] Test-mae:0.10571 [496] Test-mae:0.10570 [497] Test-mae:0.10570 [498] Test-mae:0.10569 [499] Test-mae:0.10569 [500] Test-mae:0.10568 [501] Test-mae:0.10568 [502] Test-mae:0.10568 [503] Test-mae:0.10568 [504] Test-mae:0.10567 [505] Test-mae:0.10567 [506] Test-mae:0.10566 [507] Test-mae:0.10566 [508] Test-mae:0.10566 [509] Test-mae:0.10566 [510] Test-mae:0.10565 [511] Test-mae:0.10565 [512] Test-mae:0.10562 [513] Test-mae:0.10561 [514] Test-mae:0.10557 [515] Test-mae:0.10556 [516] Test-mae:0.10552 [517] Test-mae:0.10552 [518] Test-mae:0.10551 [519] Test-mae:0.10550 [520] Test-mae:0.10548 [521] Test-mae:0.10548 [522] Test-mae:0.10548 [523] Test-mae:0.10548 [524] Test-mae:0.10546 [525] Test-mae:0.10547 [526] Test-mae:0.10544 [527] Test-mae:0.10543 [528] Test-mae:0.10541 [529] Test-mae:0.10541 [530] Test-mae:0.10540 [531] Test-mae:0.10540 [532] Test-mae:0.10538 [533] Test-mae:0.10537 [534] Test-mae:0.10537 [535] Test-mae:0.10537 [536] Test-mae:0.10535 [537] Test-mae:0.10535 [538] Test-mae:0.10535 [539] Test-mae:0.10534 [540] Test-mae:0.10533 [541] Test-mae:0.10532 [542] Test-mae:0.10531 [543] Test-mae:0.10531 [544] Test-mae:0.10529 [545] Test-mae:0.10530 [546] Test-mae:0.10529 [547] Test-mae:0.10528 [548] Test-mae:0.10527 [549] Test-mae:0.10527 [550] Test-mae:0.10527 [551] Test-mae:0.10527 [552] Test-mae:0.10525 [553] Test-mae:0.10525 [554] Test-mae:0.10526 [555] Test-mae:0.10526 [556] Test-mae:0.10525 [557] Test-mae:0.10524 [558] Test-mae:0.10523 [559] Test-mae:0.10522 [560] Test-mae:0.10522 [561] Test-mae:0.10521 [562] Test-mae:0.10521 [563] Test-mae:0.10520 [564] Test-mae:0.10519 [565] Test-mae:0.10519 [566] Test-mae:0.10520 [567] Test-mae:0.10520 [568] Test-mae:0.10519 [569] Test-mae:0.10519 [570] Test-mae:0.10519 [571] Test-mae:0.10519 [572] Test-mae:0.10517 [573] Test-mae:0.10517 [574] Test-mae:0.10517 [575] Test-mae:0.10515 [576] Test-mae:0.10514 [577] Test-mae:0.10514 [578] Test-mae:0.10514 [579] Test-mae:0.10514 [580] Test-mae:0.10514 [581] Test-mae:0.10513 [582] Test-mae:0.10512 [583] Test-mae:0.10512 [584] Test-mae:0.10512 [585] Test-mae:0.10511 [586] Test-mae:0.10509 [587] Test-mae:0.10507 [588] Test-mae:0.10508 [589] Test-mae:0.10507 [590] Test-mae:0.10507 [591] Test-mae:0.10505 [592] Test-mae:0.10504 [593] Test-mae:0.10502 [594] Test-mae:0.10501 [595] Test-mae:0.10501 [596] Test-mae:0.10501 [597] Test-mae:0.10499 [598] Test-mae:0.10500 [599] Test-mae:0.10499 [600] Test-mae:0.10500 [601] Test-mae:0.10498 [602] Test-mae:0.10497 [603] Test-mae:0.10496 [604] Test-mae:0.10494 [605] Test-mae:0.10493 [606] Test-mae:0.10492 [607] Test-mae:0.10492 [608] Test-mae:0.10491 [609] Test-mae:0.10491 [610] Test-mae:0.10490 [611] Test-mae:0.10488 [612] Test-mae:0.10488 [613] Test-mae:0.10488 [614] Test-mae:0.10487 [615] Test-mae:0.10487 [616] Test-mae:0.10487 [617] Test-mae:0.10487 [618] Test-mae:0.10486 [619] Test-mae:0.10484 [620] Test-mae:0.10484 [621] Test-mae:0.10483 [622] Test-mae:0.10483 [623] Test-mae:0.10481 [624] Test-mae:0.10482 [625] Test-mae:0.10480 [626] Test-mae:0.10479 [627] Test-mae:0.10479 [628] Test-mae:0.10479 [629] Test-mae:0.10477 [630] Test-mae:0.10476 [631] Test-mae:0.10476 [632] Test-mae:0.10476 [633] Test-mae:0.10475 [634] Test-mae:0.10476 [635] Test-mae:0.10474 [636] Test-mae:0.10474 [637] Test-mae:0.10473 [638] Test-mae:0.10473 [639] Test-mae:0.10472 [640] Test-mae:0.10472 [641] Test-mae:0.10472 [642] Test-mae:0.10472 [643] Test-mae:0.10472 [644] Test-mae:0.10472 [645] Test-mae:0.10473 [646] Test-mae:0.10471 [647] Test-mae:0.10471 [648] Test-mae:0.10471 [649] Test-mae:0.10471 [650] Test-mae:0.10471 [651] Test-mae:0.10469 [652] Test-mae:0.10469 [653] Test-mae:0.10469 [654] Test-mae:0.10469 [655] Test-mae:0.10469 [656] Test-mae:0.10469 [657] Test-mae:0.10468 [658] Test-mae:0.10468 [659] Test-mae:0.10467 [660] Test-mae:0.10467 [661] Test-mae:0.10467 [662] Test-mae:0.10467 [663] Test-mae:0.10467 [664] Test-mae:0.10467 [665] Test-mae:0.10468 [666] Test-mae:0.10469 [667] Test-mae:0.10468 [668] Test-mae:0.10469 [669] Test-mae:0.10470 [670] Test-mae:0.10468 Stopping. Best iteration: [660] Test-mae:0.10467 [04:57:38] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. Best MAE: 0.10 in 661 rounds
In [255]:
num_boost_round = model.best_iteration + 1
best_model = xg.train(
params,
dtrain,
num_boost_round=num_boost_round,
evals=[(dtest, "Test")]
)
[04:58:12] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror. [0] Test-mae:0.23820 [1] Test-mae:0.23674 [2] Test-mae:0.23530 [3] Test-mae:0.23387 [4] Test-mae:0.23247 [5] Test-mae:0.23107 [6] Test-mae:0.22970 [7] Test-mae:0.22833 [8] Test-mae:0.22696 [9] Test-mae:0.22561 [10] Test-mae:0.22431 [11] Test-mae:0.22297 [12] Test-mae:0.22169 [13] Test-mae:0.22043 [14] Test-mae:0.21918 [15] Test-mae:0.21795 [16] Test-mae:0.21672 [17] Test-mae:0.21549 [18] Test-mae:0.21429 [19] Test-mae:0.21309 [20] Test-mae:0.21191 [21] Test-mae:0.21076 [22] Test-mae:0.20961 [23] Test-mae:0.20852 [24] Test-mae:0.20741 [25] Test-mae:0.20633 [26] Test-mae:0.20525 [27] Test-mae:0.20420 [28] Test-mae:0.20312 [29] Test-mae:0.20212 [30] Test-mae:0.20108 [31] Test-mae:0.20007 [32] Test-mae:0.19908 [33] Test-mae:0.19809 [34] Test-mae:0.19714 [35] Test-mae:0.19618 [36] Test-mae:0.19526 [37] Test-mae:0.19434 [38] Test-mae:0.19344 [39] Test-mae:0.19249 [40] Test-mae:0.19156 [41] Test-mae:0.19063 [42] Test-mae:0.18969 [43] Test-mae:0.18878 [44] Test-mae:0.18787 [45] Test-mae:0.18699 [46] Test-mae:0.18611 [47] Test-mae:0.18529 [48] Test-mae:0.18441 [49] Test-mae:0.18356 [50] Test-mae:0.18275 [51] Test-mae:0.18194 [52] Test-mae:0.18115 [53] Test-mae:0.18036 [54] Test-mae:0.17958 [55] Test-mae:0.17882 [56] Test-mae:0.17804 [57] Test-mae:0.17728 [58] Test-mae:0.17653 [59] Test-mae:0.17577 [60] Test-mae:0.17503 [61] Test-mae:0.17430 [62] Test-mae:0.17356 [63] Test-mae:0.17284 [64] Test-mae:0.17215 [65] Test-mae:0.17144 [66] Test-mae:0.17076 [67] Test-mae:0.17006 [68] Test-mae:0.16935 [69] Test-mae:0.16872 [70] Test-mae:0.16806 [71] Test-mae:0.16744 [72] Test-mae:0.16679 [73] Test-mae:0.16615 [74] Test-mae:0.16551 [75] Test-mae:0.16491 [76] Test-mae:0.16429 [77] Test-mae:0.16370 [78] Test-mae:0.16311 [79] Test-mae:0.16253 [80] Test-mae:0.16196 [81] Test-mae:0.16138 [82] Test-mae:0.16080 [83] Test-mae:0.16020 [84] Test-mae:0.15960 [85] Test-mae:0.15904 [86] Test-mae:0.15845 [87] Test-mae:0.15784 [88] Test-mae:0.15729 [89] Test-mae:0.15674 [90] 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[134] Test-mae:0.13780 [135] Test-mae:0.13749 [136] Test-mae:0.13719 [137] Test-mae:0.13687 [138] Test-mae:0.13656 [139] Test-mae:0.13628 [140] Test-mae:0.13596 [141] Test-mae:0.13567 [142] Test-mae:0.13537 [143] Test-mae:0.13509 [144] Test-mae:0.13481 [145] Test-mae:0.13453 [146] Test-mae:0.13422 [147] Test-mae:0.13394 [148] Test-mae:0.13364 [149] Test-mae:0.13337 [150] Test-mae:0.13308 [151] Test-mae:0.13279 [152] Test-mae:0.13249 [153] Test-mae:0.13222 [154] Test-mae:0.13196 [155] Test-mae:0.13169 [156] Test-mae:0.13141 [157] Test-mae:0.13115 [158] Test-mae:0.13088 [159] Test-mae:0.13062 [160] Test-mae:0.13036 [161] Test-mae:0.13009 [162] Test-mae:0.12983 [163] Test-mae:0.12957 [164] Test-mae:0.12931 [165] Test-mae:0.12904 [166] Test-mae:0.12877 [167] Test-mae:0.12855 [168] Test-mae:0.12829 [169] Test-mae:0.12805 [170] Test-mae:0.12784 [171] Test-mae:0.12762 [172] Test-mae:0.12743 [173] Test-mae:0.12721 [174] Test-mae:0.12700 [175] Test-mae:0.12679 [176] Test-mae:0.12660 [177] 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Test-mae:0.11020 [307] Test-mae:0.11015 [308] Test-mae:0.11009 [309] Test-mae:0.11004 [310] Test-mae:0.10998 [311] Test-mae:0.10993 [312] Test-mae:0.10988 [313] Test-mae:0.10982 [314] Test-mae:0.10977 [315] Test-mae:0.10971 [316] Test-mae:0.10967 [317] Test-mae:0.10962 [318] Test-mae:0.10956 [319] Test-mae:0.10953 [320] Test-mae:0.10947 [321] Test-mae:0.10944 [322] Test-mae:0.10939 [323] Test-mae:0.10934 [324] Test-mae:0.10930 [325] Test-mae:0.10925 [326] Test-mae:0.10921 [327] Test-mae:0.10918 [328] Test-mae:0.10914 [329] Test-mae:0.10909 [330] Test-mae:0.10905 [331] Test-mae:0.10901 [332] Test-mae:0.10897 [333] Test-mae:0.10892 [334] Test-mae:0.10888 [335] Test-mae:0.10885 [336] Test-mae:0.10882 [337] Test-mae:0.10878 [338] Test-mae:0.10875 [339] Test-mae:0.10872 [340] Test-mae:0.10871 [341] Test-mae:0.10869 [342] Test-mae:0.10865 [343] Test-mae:0.10861 [344] Test-mae:0.10859 [345] Test-mae:0.10855 [346] Test-mae:0.10852 [347] Test-mae:0.10850 [348] Test-mae:0.10846 [349] Test-mae:0.10840 [350] Test-mae:0.10834 [351] Test-mae:0.10828 [352] Test-mae:0.10822 [353] Test-mae:0.10819 [354] Test-mae:0.10812 [355] Test-mae:0.10808 [356] Test-mae:0.10804 [357] Test-mae:0.10801 [358] Test-mae:0.10797 [359] Test-mae:0.10795 [360] Test-mae:0.10792 [361] Test-mae:0.10790 [362] Test-mae:0.10788 [363] Test-mae:0.10784 [364] Test-mae:0.10779 [365] Test-mae:0.10779 [366] Test-mae:0.10776 [367] Test-mae:0.10776 [368] Test-mae:0.10772 [369] Test-mae:0.10771 [370] Test-mae:0.10769 [371] Test-mae:0.10769 [372] Test-mae:0.10766 [373] Test-mae:0.10766 [374] Test-mae:0.10765 [375] Test-mae:0.10764 [376] Test-mae:0.10762 [377] Test-mae:0.10759 [378] Test-mae:0.10756 [379] Test-mae:0.10754 [380] Test-mae:0.10749 [381] Test-mae:0.10747 [382] Test-mae:0.10744 [383] Test-mae:0.10740 [384] Test-mae:0.10738 [385] Test-mae:0.10734 [386] Test-mae:0.10731 [387] Test-mae:0.10727 [388] Test-mae:0.10724 [389] Test-mae:0.10720 [390] Test-mae:0.10717 [391] Test-mae:0.10716 [392] 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Test-mae:0.10548 [522] Test-mae:0.10548 [523] Test-mae:0.10548 [524] Test-mae:0.10546 [525] Test-mae:0.10547 [526] Test-mae:0.10544 [527] Test-mae:0.10543 [528] Test-mae:0.10541 [529] Test-mae:0.10541 [530] Test-mae:0.10540 [531] Test-mae:0.10540 [532] Test-mae:0.10538 [533] Test-mae:0.10537 [534] Test-mae:0.10537 [535] Test-mae:0.10537 [536] Test-mae:0.10535 [537] Test-mae:0.10535 [538] Test-mae:0.10535 [539] Test-mae:0.10534 [540] Test-mae:0.10533 [541] Test-mae:0.10532 [542] Test-mae:0.10531 [543] Test-mae:0.10531 [544] Test-mae:0.10529 [545] Test-mae:0.10530 [546] Test-mae:0.10529 [547] Test-mae:0.10528 [548] Test-mae:0.10527 [549] Test-mae:0.10527 [550] Test-mae:0.10527 [551] Test-mae:0.10527 [552] Test-mae:0.10525 [553] Test-mae:0.10525 [554] Test-mae:0.10526 [555] Test-mae:0.10526 [556] Test-mae:0.10525 [557] Test-mae:0.10524 [558] Test-mae:0.10523 [559] Test-mae:0.10522 [560] Test-mae:0.10522 [561] Test-mae:0.10521 [562] Test-mae:0.10521 [563] Test-mae:0.10520 [564] Test-mae:0.10519 [565] Test-mae:0.10519 [566] Test-mae:0.10520 [567] Test-mae:0.10520 [568] Test-mae:0.10519 [569] Test-mae:0.10519 [570] Test-mae:0.10519 [571] Test-mae:0.10519 [572] Test-mae:0.10517 [573] Test-mae:0.10517 [574] Test-mae:0.10517 [575] Test-mae:0.10515 [576] Test-mae:0.10514 [577] Test-mae:0.10514 [578] Test-mae:0.10514 [579] Test-mae:0.10514 [580] Test-mae:0.10514 [581] Test-mae:0.10513 [582] Test-mae:0.10512 [583] Test-mae:0.10512 [584] Test-mae:0.10512 [585] Test-mae:0.10511 [586] Test-mae:0.10509 [587] Test-mae:0.10507 [588] Test-mae:0.10508 [589] Test-mae:0.10507 [590] Test-mae:0.10507 [591] Test-mae:0.10505 [592] Test-mae:0.10503 [593] Test-mae:0.10502 [594] Test-mae:0.10501 [595] Test-mae:0.10501 [596] Test-mae:0.10501 [597] Test-mae:0.10499 [598] Test-mae:0.10500 [599] Test-mae:0.10499 [600] Test-mae:0.10500 [601] Test-mae:0.10498 [602] Test-mae:0.10497 [603] Test-mae:0.10496 [604] Test-mae:0.10494 [605] Test-mae:0.10493 [606] Test-mae:0.10492 [607] Test-mae:0.10492 [608] Test-mae:0.10491 [609] Test-mae:0.10491 [610] Test-mae:0.10490 [611] Test-mae:0.10488 [612] Test-mae:0.10488 [613] Test-mae:0.10488 [614] Test-mae:0.10487 [615] Test-mae:0.10487 [616] Test-mae:0.10487 [617] Test-mae:0.10487 [618] Test-mae:0.10486 [619] Test-mae:0.10484 [620] Test-mae:0.10484 [621] Test-mae:0.10483 [622] Test-mae:0.10483 [623] Test-mae:0.10481 [624] Test-mae:0.10482 [625] Test-mae:0.10480 [626] Test-mae:0.10479 [627] Test-mae:0.10479 [628] Test-mae:0.10479 [629] Test-mae:0.10477 [630] Test-mae:0.10476 [631] Test-mae:0.10476 [632] Test-mae:0.10476 [633] Test-mae:0.10475 [634] Test-mae:0.10476 [635] Test-mae:0.10474 [636] Test-mae:0.10474 [637] Test-mae:0.10473 [638] Test-mae:0.10473 [639] Test-mae:0.10472 [640] Test-mae:0.10472 [641] Test-mae:0.10472 [642] Test-mae:0.10472 [643] Test-mae:0.10472 [644] Test-mae:0.10472 [645] Test-mae:0.10473 [646] Test-mae:0.10471 [647] Test-mae:0.10471 [648] Test-mae:0.10471 [649] Test-mae:0.10471 [650] Test-mae:0.10471 [651] Test-mae:0.10469 [652] Test-mae:0.10469 [653] Test-mae:0.10469 [654] Test-mae:0.10469 [655] Test-mae:0.10469 [656] Test-mae:0.10469 [657] Test-mae:0.10468 [658] Test-mae:0.10468 [659] Test-mae:0.10467 [660] Test-mae:0.10467 [04:58:21] WARNING: ../src/objective/regression_obj.cu:174: reg:linear is now deprecated in favor of reg:squarederror.
In [257]:
MSE(best_model.predict(dtest), y_test)
Out[257]:
0.02294750420443479
In [ ]: